Miyakogusa Predicted Gene
- Lj1g3v3089430.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3089430.1 tr|I1N4T1|I1N4T1_SOYBN DNA-directed RNA
polymerase (Fragment) OS=Glycine max PE=3
SV=1,81.11,0,RNA_POL_PHAGE_2,DNA-directed RNA polymerase, phage-type;
RNA_POL_PHAGE_1,DNA-directed RNA polymerase,CUFF.30026.1
(2181 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70388 similar to UniRef100_A7PAG7 Cluster: DNA-direct... 1279 0.0
gnl|LJGI|CB826632 similar to UniRef100_A7PAG7 Cluster: DNA-direc... 180 2e-44
>gnl|LJGI|TC70388 similar to UniRef100_A7PAG7 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (22%)
Length = 1297
Score = 1279 bits (645), Expect = 0.0
Identities = 645/645 (100%)
Strand = Plus / Plus
Query: 1537 caggtagatagaaaattggttaagcagacagtgatgacatcagtatatggtgtcacttac 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggtagatagaaaattggttaagcagacagtgatgacatcagtatatggtgtcacttac 60
Query: 1597 attggagcacgggaacagataaagaggaggttgaaagaaagggatgtcttttcagatgat 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attggagcacgggaacagataaagaggaggttgaaagaaagggatgtcttttcagatgat 120
Query: 1657 acaaagctctttggtgcttcttgttatgctgcaaaggtcaccttaactgccttagaggag 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaaagctctttggtgcttcttgttatgctgcaaaggtcaccttaactgccttagaggag 180
Query: 1717 atgtttcaaggggcacgaagtatcatgaattggcttggtgaatgtgcaaaagtaattgca 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgtttcaaggggcacgaagtatcatgaattggcttggtgaatgtgcaaaagtaattgca 240
Query: 1777 tctgaaaatcaaccggtgcgctggaccactcctcttggacttcctgtggtgcaaccttac 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctgaaaatcaaccggtgcgctggaccactcctcttggacttcctgtggtgcaaccttac 300
Query: 1837 cgtaaacttggaaggcacattatcaaaacttcacttcagatgttgacattacaacgagaa 1896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtaaacttggaaggcacattatcaaaacttcacttcagatgttgacattacaacgagaa 360
Query: 1897 acagacaaggtcatggtcaagcggcagaggacagcatttccgccaaattttgttcactca 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acagacaaggtcatggtcaagcggcagaggacagcatttccgccaaattttgttcactca 420
Query: 1957 cttgatggttctcatatgatgatgactgcagttgcctgcaaacaagcaggcttggctttt 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttgatggttctcatatgatgatgactgcagttgcctgcaaacaagcaggcttggctttt 480
Query: 2017 gccggggtccatgattcatattggacgcatgcgtgtgatgtggatgatatgaacagaata 2076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gccggggtccatgattcatattggacgcatgcgtgtgatgtggatgatatgaacagaata 540
Query: 2077 ctgagagggaaatttgtagaactctatgagaccccaatactggaaaatttattggagggc 2136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctgagagggaaatttgtagaactctatgagaccccaatactggaaaatttattggagggc 600
Query: 2137 tttcagaagtctttcccatcattgtcatttccacccttgcctgag 2181
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttcagaagtctttcccatcattgtcatttccacccttgcctgag 645
>gnl|LJGI|CB826632 similar to UniRef100_A7PAG7 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (13%)
Length = 520
Score = 180 bits (91), Expect = 2e-44
Identities = 268/327 (81%)
Strand = Plus / Plus
Query: 1798 tggaccactcctcttggacttcctgtggtgcaaccttaccgtaaacttggaaggcacatt 1857
||||||||||| ||||| |||||||| || |||||||| || ||| |||||||| ||
Sbjct: 87 tggaccactccccttgggcttcctgtagtacaaccttatcgccaacacggaaggcatctt 146
Query: 1858 atcaaaacttcacttcagatgttgacattacaacgagaaacagacaaggtcatggtcaag 1917
||||| ||||| |||||| | ||||| ||||| || || || |||||||||||| ||
Sbjct: 147 atcaagacttcccttcaggtattgacgttacagcgggagactgacaaggtcatgactaaa 206
Query: 1918 cggcagaggacagcatttccgccaaattttgttcactcacttgatggttctcatatgatg 1977
| ||||| ||||| ||| | ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 207 agacagagaacagcttttgccccaaattttgttcactctcttgatggttctcacatgatg 266
Query: 1978 atgactgcagttgcctgcaaacaagcaggcttggcttttgccggggtccatgattcatat 2037
|||||||||||||| || ||| ||||||| ||| || || ||||| ||||||||||||
Sbjct: 267 atgactgcagttgcttgtaaaaaagcagggttgaacttcgcaggggttcatgattcatat 326
Query: 2038 tggacgcatgcgtgtgatgtggatgatatgaacagaatactgagagggaaatttgtagaa 2097
||||| || ||||||||||| ||||| ||||| || ||||||| | || ||||| |||
Sbjct: 327 tggacacacgcgtgtgatgttgatgaaatgaatagggtactgagggaaaagtttgttgaa 386
Query: 2098 ctctatgagaccccaatactggaaaat 2124
||||| ||| | ||| || ||||||||
Sbjct: 387 ctctacgaggctccagtattggaaaat 413