Miyakogusa Predicted Gene
- Lj1g3v3053740.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v3053740.1 tr|Q8LLR2|Q8LLR2_VITVI MADS-box protein 2
OS=Vitis vinifera GN=MADS2 PE=2
SV=1,91.04,8e-29,SRF-like,Transcription factor, MADS-box; no
description,Transcription factor, MADS-box;
SRF-TF,Trans,gene.g34069.t1.1
(558 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75219 similar to UniRef100_Q56NI4 Cluster: MADS box p... 371 e-102
gnl|LJGI|TC76874 UniRef100_Q533S8 Cluster: MADS box protein AP1a... 103 1e-21
gnl|LJGI|TC68434 UniRef100_Q533S6 Cluster: MADS box protein SEP3... 103 1e-21
gnl|LJGI|GO024192 similar to UniRef100_Q8LLR1 Cluster: MADS-box ... 84 1e-15
gnl|LJGI|TC67825 UniRef100_Q533S1 Cluster: MADS box protein AGa;... 84 1e-15
gnl|LJGI|TC57459 UniRef100_Q533R8 Cluster: MADS box protein AGL1... 84 1e-15
gnl|LJGI|GO037100 homologue to UniRef100_A0EIX6 Cluster: Transcr... 78 7e-14
gnl|LJGI|TC65119 homologue to UniRef100_Q533R9 Cluster: MADS box... 78 7e-14
gnl|LJGI|BP064158 similar to UniRef100_A7NU52 Cluster: Chromosom... 70 2e-11
gnl|LJGI|TC62447 similar to UniRef100_Q9M725 Cluster: MADS-box t... 66 2e-10
gnl|LJGI|TC60537 similar to UniRef100_Q7Y1U9 Cluster: SVP-like f... 66 2e-10
gnl|LJGI|NP7225997 GB|AY770396.1|AAX13297.1 MADS box protein AP1... 64 1e-09
gnl|LJGI|FS335696 similar to UniRef100_Q67BK3 Cluster: AGL15; n=... 58 6e-08
gnl|LJGI|GO031822 weakly similar to UniRef100_Q9AT62 Cluster: MA... 56 2e-07
gnl|LJGI|TC81268 similar to UniRef100_Q6RF31 Cluster: MADS box t... 56 2e-07
>gnl|LJGI|TC75219 similar to UniRef100_Q56NI4 Cluster: MADS box protein M6; n=1;
Pisum sativum|Rep: MADS box protein M6 - Pisum sativum
(Garden pea), complete
Length = 1276
Score = 371 bits (187), Expect = e-102
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1 atggggagaggaagagtggagctgaagaggatagagaacaagataaacaggcaagttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atggggagaggaagagtggagctgaagaggatagagaacaagataaacaggcaagttaca 369
Query: 61 tttgcaaagaggagaaatgggcttctcaagaaagcttatgagctttctgttctctgtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttgcaaagaggagaaatgggcttctcaagaaagcttatgagctttctgttctctgtgat 429
Query: 121 gctgaggttgctcttattgtcttctccactcgtggcaagctttatgagttttgtagcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gctgaggttgctcttattgtcttctccactcgtggcaagctttatgagttttgtagcagc 489
Query: 181 tctagca 187
|||||||
Sbjct: 490 tctagca 496
>gnl|LJGI|TC76874 UniRef100_Q533S8 Cluster: MADS box protein AP1a; n=1; Lotus
japonicus|Rep: MADS box protein AP1a - Lotus japonicus,
complete
Length = 1382
Score = 103 bits (52), Expect = 1e-21
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 20 agctgaagaggatagagaacaagataaacaggcaagttacatttgcaaagaggagaaatg 79
||||||||||||||||||||||||| || |||| || || || | || |||||| ||
Sbjct: 310 agctgaagaggatagagaacaagatcaatcggcaggtaactttctccaaaaggagagctg 369
Query: 80 ggcttctcaagaaagcttatgagctttctgttctctgtgatgctgaggttgctcttattg 139
||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||| | ||||
Sbjct: 370 ggcttctcaagaaagctcatgagatctctgttctctgcgatgctgaggtcgctttgattg 429
Query: 140 tcttctcc 147
||||||||
Sbjct: 430 tcttctcc 437
>gnl|LJGI|TC68434 UniRef100_Q533S6 Cluster: MADS box protein SEP3; n=1; Lotus
japonicus|Rep: MADS box protein SEP3 - Lotus japonicus,
complete
Length = 1153
Score = 103 bits (52), Expect = 1e-21
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 1 atggggagaggaagagtggagctgaagaggatagagaacaagataaacaggcaagttaca 60
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct: 46 atggggagaggaagagtggagctgaagagaattgagaacaagatcaacaggcaagtgacc 105
Query: 61 tttgcaaagaggagaaatgggcttctcaagaaagcttatgagctttctgttctctgtgat 120
|| || || | || || || || | |||||||||||||| ||||| ||||| || |||
Sbjct: 106 ttcgctaaacgcaggaacggactattgaagaaagcttatgaactttccgttctttgcgat 165
Query: 121 gctgaggttgctcttattgtcttctcca 148
|| ||||||||||| || |||||||||
Sbjct: 166 gcggaggttgctctcatcatcttctcca 193
>gnl|LJGI|GO024192 similar to UniRef100_Q8LLR1 Cluster: MADS-box protein 3; n=1; Vitis
vinifera|Rep: MADS-box protein 3 - Vitis vinifera
(Grape), partial (53%)
Length = 482
Score = 83.8 bits (42), Expect = 1e-15
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 1 atggggagaggaagagtggagctgaagaggatagagaacaagataaacaggcaagttaca 60
||||| ||||| ||||| ||||||||||||||||||||||| || ||| | || |||||
Sbjct: 95 atgggtagaggtagagttgagctgaagaggatagagaacaaaatcaaccgccaggttact 154
Query: 61 tttgcaaagaggagaaatgggcttctcaagaaagcttatgagctttctgttctctgtgat 120
|| | || ||||| ||||| | ||||||||||| | |||||| || |||| ||||||
Sbjct: 155 ttctccaaaaggaggaatggtttgctcaagaaagcatgtgagctctcaattctgtgtgat 214
Query: 121 gctgaggttgctct 134
||||||||||||||
Sbjct: 215 gctgaggttgctct 228
>gnl|LJGI|TC67825 UniRef100_Q533S1 Cluster: MADS box protein AGa; n=1; Lotus
japonicus|Rep: MADS box protein AGa - Lotus japonicus,
complete
Length = 1152
Score = 83.8 bits (42), Expect = 1e-15
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 73 agaaatgggcttctcaagaaagcttatgagctttctgttctctgtgatgctgaggttgct 132
|||||||| ||||| ||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct: 146 agaaatggccttcttaagaaagcttatgagctatctgtgctttgtgatgcagaggttgct 205
Query: 133 cttattgtcttctc 146
| |||||||||||
Sbjct: 206 ttgattgtcttctc 219
>gnl|LJGI|TC57459 UniRef100_Q533R8 Cluster: MADS box protein AGL11; n=1; Lotus
japonicus|Rep: MADS box protein AGL11 - Lotus japonicus,
complete
Length = 983
Score = 83.8 bits (42), Expect = 1e-15
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 67 aagaggagaaatgggcttctcaagaaagcttatgagctttctgttctctgtgatgctgag 126
||||| ||||| |||||||| ||||||||||||||||| || || || |||||||||||
Sbjct: 150 aagagaagaaacgggcttctgaagaaagcttatgagctatcagtgctgtgtgatgctgaa 209
Query: 127 gttgctcttattgtcttctcca 148
||||| || |||||||||||||
Sbjct: 210 gttgccctcattgtcttctcca 231
>gnl|LJGI|GO037100 homologue to UniRef100_A0EIX6 Cluster: Transcription factor AGL20;
n=1; Ipomoea batatas|Rep: Transcription factor AGL20 -
Ipomoea batatas (Sweet potato) (Batate), partial (33%)
Length = 371
Score = 77.8 bits (39), Expect = 7e-14
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 65 caaagaggagaaatgggcttctcaagaaagcttatgagctttctgttctctgtgatgctg 124
||||||| |||||||| | |||||||| || | ||||||||| ||||| ||||||||||
Sbjct: 211 caaagagacgaaatgggttgctcaagaaggcatttgagctttcagttctgtgtgatgctg 270
Query: 125 aggttgctcttattgtcttctccactcgtggcaagctttatga 167
|||| ||||||||||| ||||| | |||| |||||||||||
Sbjct: 271 aggtggctcttattgttttctctccaagtgggaagctttatga 313
>gnl|LJGI|TC65119 homologue to UniRef100_Q533R9 Cluster: MADS box protein AGL1; n=1;
Lotus japonicus|Rep: MADS box protein AGL1 - Lotus
japonicus, complete
Length = 1053
Score = 77.8 bits (39), Expect = 7e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 92 aagcttatgagctttctgttctctgtgatgctgaggttgctcttattgtcttctc 146
||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 184 aagcttatgagctatctgttctgtgtgatgctgaagttgctctcattgtcttctc 238
>gnl|LJGI|BP064158 similar to UniRef100_A7NU52 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (75%)
Length = 394
Score = 69.9 bits (35), Expect = 2e-11
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 52 caagttacatttgcaaagaggagaaatgggcttctcaagaaagcttatgagctttctgtt 111
|||||||| || |||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct: 216 caagttactttctcaaagaggaggaatgggctgatcaagaaagcttatgaactttctgtt 275
Query: 112 ctctgtg 118
|| ||||
Sbjct: 276 ctttgtg 282
>gnl|LJGI|TC62447 similar to UniRef100_Q9M725 Cluster: MADS-box transcription factor;
n=1; Canavalia lineata|Rep: MADS-box transcription
factor - Canavalia lineata, partial (72%)
Length = 820
Score = 65.9 bits (33), Expect = 2e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 86 tcaagaaagcttatgagctttctgttctctgtgatgctgaggttgctcttattgtcttct 145
||||||||||| | |||||||| ||||| |||||||||||||||| | ||||||| ||||
Sbjct: 180 tcaagaaagctcaagagctttcagttctgtgtgatgctgaggttggtattattgtattct 239
Query: 146 c 146
|
Sbjct: 240 c 240
>gnl|LJGI|TC60537 similar to UniRef100_Q7Y1U9 Cluster: SVP-like floral repressor;
n=1; Eucalyptus occidentalis|Rep: SVP-like floral
repressor - Eucalyptus occidentalis, partial (94%)
Length = 1471
Score = 65.9 bits (33), Expect = 2e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 86 tcaagaaagcttatgagctttctgttctctgtgatgctgaggttgctcttattgtcttct 145
||||||||||| | |||||||| ||||||||||||||||| ||||| ||| | |||||||
Sbjct: 613 tcaagaaagctgaagagctttcagttctctgtgatgctgatgttgcccttgtagtcttct 672
Query: 146 c 146
|
Sbjct: 673 c 673
>gnl|LJGI|NP7225997 GB|AY770396.1|AAX13297.1 MADS box protein AP1b;LjAP1b; A function
protein; includes MADS, I, K, and C domains;
AP1/SQUA-like
Length = 1122
Score = 63.9 bits (32), Expect = 1e-09
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 88 aagaaagcttatgagctttctgttctctgtgatgctgaggttgctcttattgtcttctcc 147
||||||||| ||||| | ||||| || |||||||||||||||||| | ||||||||||||
Sbjct: 167 aagaaagctcatgagatctctgtgctatgtgatgctgaggttgctttgattgtcttctcc 226
>gnl|LJGI|FS335696 similar to UniRef100_Q67BK3 Cluster: AGL15; n=1; Glycine max|Rep:
AGL15 - Glycine max (Soybean), partial (66%)
Length = 772
Score = 58.0 bits (29), Expect = 6e-08
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 48 caggcaagttacatttgcaaagaggagaaatgggcttctcaagaaagcttatgagctttc 107
||||||||| ||||| | |||||||||| |||| | |||||||| || | ||||| |
Sbjct: 310 caggcaagtcacattctccaagaggagaactgggttgctcaagaaggcaaaggagctagc 369
Query: 108 tgttctctgtgatgctgaggttgctcttattgtcttctcca 148
||||||||||||||||||||||| |||| |||||||||
Sbjct: 370 cattctctgtgatgctgaggttgctgttatcatcttctcca 410
>gnl|LJGI|GO031822 weakly similar to UniRef100_Q9AT62 Cluster: MADS box transcription
factor; n=1; Ipomoea batatas|Rep: MADS box transcription
factor - Ipomoea batatas (Sweet potato) (Batate),
partial (41%)
Length = 520
Score = 56.0 bits (28), Expect = 2e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 49 aggcaagttacatttgcaaagaggagaaatgggcttctcaagaaagct 96
|||||||| ||||| ||||||||||||| |||||| |||||||||||
Sbjct: 143 aggcaagtgacattctcaaagaggagaaaagggcttttcaagaaagct 190
>gnl|LJGI|TC81268 similar to UniRef100_Q6RF31 Cluster: MADS box transcription factor;
n=1; Populus tomentosa|Rep: MADS box transcription
factor - Populus tomentosa (Chinese white poplar),
partial (46%)
Length = 773
Score = 56.0 bits (28), Expect = 2e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 49 aggcaagttacatttgcaaagaggagaaatgggcttctcaagaaagct 96
|||||||| ||||| ||||||||||||| |||||| |||||||||||
Sbjct: 158 aggcaagtgacattctcaaagaggagaaaagggcttttcaagaaagct 205