Miyakogusa Predicted Gene

Lj1g3v3022260.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3022260.2 CUFF.29885.2
         (1905 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP054382 similar to UniRef100_Q0JLE4 Cluster: Os01g0605...   161   2e-38
gnl|LJGI|TC74049 similar to UniRef100_A7PGM1 Cluster: Chromosome...   105   1e-21

>gnl|LJGI|BP054382 similar to UniRef100_Q0JLE4 Cluster: Os01g0605500 protein; n=1; Oryza
            sativa Japonica Group|Rep: Os01g0605500 protein - Oryza
            sativa subsp. japonica (Rice), partial (4%)
          Length = 543

 Score =  161 bits (81), Expect = 2e-38
 Identities = 134/151 (88%), Gaps = 3/151 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1742 ctgccaagaaacgaagcttttgggacataactgctgctaacagcccatcagttacttcag 1801
            |||||||||||||||||||||||||||||||  |  | || ||||| ||||||||| || 
Sbjct: 460  ctgccaagaaacgaagcttttgggacataaccacgacaaatagcccctcagttactacat 401

                                                                        
Query: 1802 tgaatgggagaaaaactagaagtcatgtcatttctgaacctactgca---catccatcca 1858
            | ||||||||||||||||||||||||||| |||||||||||||||||   | ||||||||
Sbjct: 400  taaatgggagaaaaactagaagtcatgtcctttctgaacctactgcacctcctccatcca 341

                                           
Query: 1859 tgcttcttcagccaggatttgctcgtcaaaa 1889
            ||||||||||||| || ||||||||||||||
Sbjct: 340  tgcttcttcagccgggttttgctcgtcaaaa 310


>gnl|LJGI|TC74049 similar to UniRef100_A7PGM1 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (5%)
          Length = 609

 Score =  105 bits (53), Expect = 1e-21
 Identities = 77/85 (90%)
 Strand = Plus / Plus

                                                                       
Query: 399 aacttcagaacttgtggaagcagttctgcaagggagaaatggatcagttttctgttatgg 458
           |||||| |||||||||||||  ||||||||||||||| ||||  ||||||||||||||||
Sbjct: 521 aacttcggaacttgtggaagtggttctgcaagggagagatgggccagttttctgttatgg 580

                                    
Query: 459 tgccactggagctgggaaaacttac 483
           | ||||||||| |||||||||||||
Sbjct: 581 ttccactggagttgggaaaacttac 605