Miyakogusa Predicted Gene

Lj1g3v2953420.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2953420.1 Non Chatacterized Hit- tr|D8QV64|D8QV64_SELML
Putative uncharacterized protein OS=Selaginella
moelle,20.78,3e-18,PPR_2,Pentatricopeptide repeat;
PPR,Pentatricopeptide repeat; PPR: pentatricopeptide repeat
domain,P,CUFF.29744.1
         (1488 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV421981 similar to UniRef100_A7QH86 Cluster: Chromosom...   523   e-147

>gnl|LJGI|AV421981 similar to UniRef100_A7QH86 Cluster: Chromosome chr18 scaffold_96,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_96, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (24%)
          Length = 468

 Score =  523 bits (264), Expect = e-147
 Identities = 278/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 170 tagttgaaaacgttctcggccgattgttcgcttcccattccaatggcctcaaggcgctgg 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tagttgaaaacgttctcggccgattgttcgcttcccattccaatggcctcaaggcgctgg 243

                                                                       
Query: 230 agtttttcaacttcaccctccaccattcccagtnnnnnnnatctcatgtttcattcgaaa 289
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 244 agtttttcaacttcaccctccaccattcccagtcccccccatctcatgtttcattcgaaa 303

                                                                       
Query: 290 tgaccctccacatcctcactaggatgcggtatttcgataaagcttggatgttgctgcaag 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgaccctccacatcctcactaggatgcggtatttcgataaagcttggatgttgctgcaag 363

                                                                       
Query: 350 aaaccgccaggacccacccttctttgattacccttaaggcaatgagcatcatgctttcaa 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaaccgccaggacccacccttctttgattacccttaaggcaatgagcatcatgctttcaa 423

                                                        
Query: 410 aaattgcaaaataccaatcttttgaggatacccttgatgggttta 454
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaattgcaaaataccaatcttttgaggatacccttgatgggttta 468



 Score = 60.0 bits (30), Expect = 4e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 61  cctgacacaaacaccatcaccagaatcatcaacg 94
           ||||||||| ||||||||||||||||||||||||
Sbjct: 75  cctgacacagacaccatcaccagaatcatcaacg 108