Miyakogusa Predicted Gene

Lj1g3v2939610.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2939610.1 tr|E9JRK5|E9JRK5_SETIT Ubiquitin-protein ligase
(Fragment) OS=Setaria italica PE=4
SV=1,79.07,0.000000001,seg,NULL,CUFF.29716.1
         (537 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71157 similar to UniRef100_A7PKC6 Cluster: Chromosome...   488   e-137

>gnl|LJGI|TC71157 similar to UniRef100_A7PKC6 Cluster: Chromosome chr15 scaffold_19,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr15 scaffold_19, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (88%)
          Length = 571

 Score =  488 bits (246), Expect = e-137
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 288 tggaagatttgttactatgctccgaaatccatcacctatactgaaatcttgtgcagcatt 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaagatttgttactatgctccgaaatccatcacctatactgaaatcttgtgcagcatt 60

                                                                       
Query: 348 tgctcttctccagttcacaatccctggtggacgacatgctgggcaccatgctagcctcat 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgctcttctccagttcacaatccctggtggacgacatgctgggcaccatgctagcctcat 120

                                                                       
Query: 408 gcagaatgcaggtgcagcaagagttctgcgtggtgcagccgctgcagcgactgcgccact 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcagaatgcaggtgcagcaagagttctgcgtggtgcagccgctgcagcgactgcgccact 180

                                                                       
Query: 468 tgaagcgaaaatcttcgccagaattgttcttcgcaatcttgagtatcaccagatagaaca 527
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 tgaagcgaaaatcttcgccagaattgttcttcgctatcttgagtatcaccagatagaaca 240

                     
Query: 528 tacaaagtag 537
           ||||||||||
Sbjct: 241 tacaaagtag 250