Miyakogusa Predicted Gene

Lj1g3v2938540.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2938540.1 Non Chatacterized Hit- tr|K0RBM4|K0RBM4_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,23.88,0.00000000003,DUF3754,Protein of unknown function
DUF3754,NODE_55749_length_1672_cov_68.294853.path1.1
         (1395 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV409038                                                     474   e-133
gnl|LJGI|TC73930 similar to UniRef100_A7PXX2 Cluster: Chromosome...    52   1e-05

>gnl|LJGI|AV409038 
          Length = 349

 Score =  474 bits (239), Expect = e-133
 Identities = 287/303 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcgttccgattaccacatttccaattctgttgaacccgttggacagaattcagctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  atgcgttccgattaccacatttccaattctgttgaacccgttggacagaattcagctgat 106

                                                                       
Query: 61  tcagagaaacaagttgtggcgaatgggaaggattcaagcttggctagcaatgacatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tcagagaaacaagttgtggcgaatgggaaggattcaagcttggctagcaatgacatcatt 166

                                                                       
Query: 121 gaaattgaagacaggaaggtctttcaggacatgcaggttcaactggaaaactctatgctt 180
           |||||||||||||||     || ||  ||||||       ||| ||||||||||||||||
Sbjct: 167 gaaattgaagacaggcccacctatcttgacatgggctgagaacgggaaaactctatgctt 226

                                                                       
Query: 181 tccgacagtggttttgacctgaggagtcttttgcgttctctggagggcataactagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tccgacagtggttttgacctgaggagtcttttgcgttctctggagggcataactagcaaa 286

                                                                       
Query: 241 aaagattatgaaggggggtccagagttgctgtcgctactcgattccaacgtgctttcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaagattatgaaggggggtccagagttgctgtcgctactcgattccaacgtgctttcatg 346

              
Query: 301 cag 303
           |||
Sbjct: 347 cag 349


>gnl|LJGI|TC73930 similar to UniRef100_A7PXX2 Cluster: Chromosome chr15 scaffold_37,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr15 scaffold_37, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (18%)
          Length = 705

 Score = 52.0 bits (26), Expect = 1e-05
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                      
Query: 1370 acaaacagacatgggatcggtatcag 1395
            ||||||||||||||||||||||||||
Sbjct: 1    acaaacagacatgggatcggtatcag 26