Miyakogusa Predicted Gene

Lj1g3v2908510.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2908510.1 tr|A9U0Y0|A9U0Y0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_173084,33.83,0.00000000000004,Small MutS-related
domain,Smr protein/MutS2 C-terminal; Smr,Smr protein/MutS2 C-terminal;
DUF1771,Do,CUFF.29661.1
         (1305 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP040650 similar to UniRef100_A2Q1V5 Cluster: Smr prote...   672   0.0  

>gnl|LJGI|BP040650 similar to UniRef100_A2Q1V5 Cluster: Smr protein/MutS2 C-terminal;
            n=1; Medicago truncatula|Rep: Smr protein/MutS2
            C-terminal - Medicago truncatula (Barrel medic), partial
            (25%)
          Length = 512

 Score =  672 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                        
Query: 967  gcagcagaagctattcaagcattacaaggacatctctataaaattgaaagccaaggcttc 1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  gcagcagaagctattcaagcattacaaggacatctctataaaattgaaagccaaggcttc 453

                                                                        
Query: 1027 ccaaagaatacagccacttcaagtgtgaaggagaatgggcttgcacattcaactatcaga 1086
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  ccaaagaatacagccacttcaagtgtgaaggagaatgggcttgcacattcaactatcaga 393

                                                                        
Query: 1087 tctcttaatgtcacaaacagggaaaatttggataaacaagcgccattaaggcttaggtca 1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  tctcttaatgtcacaaacagggaaaatttggataaacaagcgccattaaggcttaggtca 333

                                                                        
Query: 1147 tcagctttacatgtcataacaggtattggcaaccatagccgaggacaagctgctcttcct 1206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332  tcagctttacatgtcataacaggtattggcaaccatagccgaggacaagctgctcttcct 273

                                                                        
Query: 1207 tctgctgtgagaaatttcctcattgaaaatagataccgttttgaggagactagaccagga 1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272  tctgctgtgagaaatttcctcattgaaaatagataccgttttgaggagactagaccagga 213

                                                   
Query: 1267 gcgatcacagtgtggcccaagtttcgtcaaagttgattg 1305
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 212  gcgatcacagtgtggcccaagtttcgtcaaagttgattg 174