Miyakogusa Predicted Gene

Lj1g3v2898460.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2898460.3 Non Chatacterized Hit- tr|K4A243|K4A243_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si032940,43.93,2e-18,RRM_1,RNA recognition motif domain; RRM,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL; FAMI,CUFF.29669.3
         (987 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS331270 weakly similar to UniRef100_A2Q1V9 Cluster: RN...   910   0.0  

>gnl|LJGI|FS331270 weakly similar to UniRef100_A2Q1V9 Cluster: RNA-binding region
           RNP-1; n=1; Medicago truncatula|Rep: RNA-binding region
           RNP-1 - Medicago truncatula (Barrel medic), partial (7%)
          Length = 486

 Score =  910 bits (459), Expect = 0.0
 Identities = 465/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctccaagaatagtgaaacgaggtgctgcggcaaggaaagcgaaggcttcttcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  atgcctccaagaatagtgaaacgaggtgctgcggcaaggaaagcgaaggcttcttcaaag 79

                                                                       
Query: 61  gctgctttggagaaccagcgtcagcaacaggaacctgaaccagttgaggaagtggttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gctgctttggagaaccagcgtcagcaacaggaacctgaaccagttgaggaagtggttgtg 139

                                                                       
Query: 121 aagaaccatgaagagaacccagttgttgatgatgctgttgtggaggagaagccaattgat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 140 aagaaccatgaagagaacccagttgttgatgatgctgttgtggaagagaagccaattgat 199

                                                                       
Query: 181 gcggaggaccaattggccccagagggtgtgcctgatgtgacaaacaatgctggggaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcggaggaccaattggccccagagggtgtgcctgatgtgacaaacaatgctggggaggtt 259

                                                                       
Query: 241 aaggagtccatagatgaatttgaaaacgatgaacacttggatttggaggataatgatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaggagtccatagatgaatttgaaaacgatgaacacttggatttggaggataatgatcct 319

                                                                       
Query: 301 gagtatggagctgaggagtatggtggagttgactatgatgggaaggaaattgagcaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagtatggagctgaggagtatggtggagttgactatgatgggaaggaaattgagcaagat 379

                                                                       
Query: 361 gaggatcaggaggtgggagatgaagtagacgaagaacctgaagagtttgtggttgaagaa 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaggatcatgaggtgggagatgaagtagacgaagaacctgaagagtttgtggttgaagaa 439

                                                          
Query: 421 gagggagattcagctgatgaagaagttgaatatgtttatgaagaagt 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagggagattcagctgatgaagaagttgaatatgtttatgaagaagt 486