Miyakogusa Predicted Gene
- Lj1g3v2873800.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2873800.1 tr|G7KTQ9|G7KTQ9_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_7g110080 PE=4
S,31.35,5e-19,REPLICATION FACTOR A 1, RFA1,NULL; Nucleic acid-binding
proteins,Nucleic acid-binding, OB-fold-like;,CUFF.29627.1
(771 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78286 285 2e-76
gnl|LJGI|TC75606 similar to UniRef100_A3MUM3 Cluster: Shikimate ... 98 1e-19
gnl|LJGI|GO027274 weakly similar to UniRef100_Q88TA3 Cluster: Ce... 96 4e-19
gnl|LJGI|TC79250 similar to UniRef100_Q94FN3 Cluster: Phosphatid... 86 4e-16
gnl|LJGI|FS316028 similar to UniRef100_O76313 Cluster: Vitelline... 72 6e-12
gnl|LJGI|TC68018 similar to UniRef100_A7P7G9 Cluster: Chromosome... 68 9e-11
gnl|LJGI|BP051187 64 1e-09
gnl|LJGI|BW598101 weakly similar to UniRef100_A2Q377 Cluster: Nu... 54 1e-06
>gnl|LJGI|TC78286
Length = 847
Score = 285 bits (144), Expect = 2e-76
Identities = 249/284 (87%)
Strand = Plus / Plus
Query: 445 actgcagtttcccgcgagaaacaatacaccaaaggtgcaaatatcacaaggatgatcgag 504
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 1 actgcagtttcccgtgagaaacaatataccaaaggtgcaaatattacaaggatgattgag 60
Query: 505 ctccaattgattgatgataggggcattgtccagtgtaccttttttgtaagctatgttgac 564
||||| ||| |||| ||||||| | |||||| ||||||||||||| ||||||||||||
Sbjct: 61 ctccagctgactgatcataggggaagtgtccaatgtaccttttttggaagctatgttgat 120
Query: 565 gtttttactcatcatgtacaagaggatcgacaagctatgcctgtggttgttgtcaagttt 624
||| ||||||||||||| | |||| || ||||||||||||| ||||||||| || |||||
Sbjct: 121 gttattactcatcatgttcgagagaatggacaagctatgccggtggttgttatccagttt 180
Query: 625 gctaagattaagacattcaaaggagattttgtgcttcaaaatgttatgcatgctaccagg 684
|||||||| ||||| ||||||||| || ||||| |||| ||||||||||||||||| |||
Sbjct: 181 gctaagatcaagactttcaaaggaaatgttgtgattcagaatgttatgcatgctacaagg 240
Query: 685 attctctggaatcctgaaattcctgaggtgcttgctttccgcaa 728
||| | ||||||| ||||||||| ||||| ||| |||||||||
Sbjct: 241 attatgtggaatcatgaaattccagaggttgttgatttccgcaa 284
>gnl|LJGI|TC75606 similar to UniRef100_A3MUM3 Cluster: Shikimate kinase; n=1;
Pyrobaculum calidifontis JCM 11548|Rep: Shikimate kinase
- Pyrobaculum calidifontis (strain JCM 11548 / VA1),
partial (7%)
Length = 1287
Score = 97.6 bits (49), Expect = 1e-19
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 atggcttcgttgtctgcaagtttgaactctgttgccagcctttgcagtggaagagacaca 60
|||||||||||||||| ||||||||| ||||||||||||||||| | ||||| |||||||
Sbjct: 329 atggcttcgttgtctggaagtttgaattctgttgccagcctttgtaatggaacagacaca 388
Query: 61 tggaggatt 69
|||||||||
Sbjct: 389 tggaggatt 397
>gnl|LJGI|GO027274 weakly similar to UniRef100_Q88TA3 Cluster: Cell surface protein;
n=1; Lactobacillus plantarum|Rep: Cell surface protein -
Lactobacillus plantarum, partial (3%)
Length = 803
Score = 95.6 bits (48), Expect = 4e-19
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 2 tggcttcgttgtctgcaagtttgaactctgttgccagcctttgcagtggaagagacacat 61
||||||||||||||| ||||||||| ||||||||||||||||| | ||||| ||||||||
Sbjct: 770 tggcttcgttgtctggaagtttgaattctgttgccagcctttgtaatggaacagacacat 711
Query: 62 ggaggatt 69
||||||||
Sbjct: 710 ggaggatt 703
>gnl|LJGI|TC79250 similar to UniRef100_Q94FN3 Cluster: Phosphatidylinositol
transfer-like protein II; n=1; Lotus japonicus|Rep:
Phosphatidylinositol transfer-like protein II - Lotus
japonicus, partial (4%)
Length = 985
Score = 85.7 bits (43), Expect = 4e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 85 aggatgtgggagatgtgccctatttctgagccagggaagccatttgctgtccagatggtg 144
|||||||||||||||||||| || ||||||||||| |||||| |||| || ||| |||||
Sbjct: 487 aggatgtgggagatgtgcccaatatctgagccaggcaagccagttgcagtgcagctggtg 546
Query: 145 ttaattgatgctgag 159
||||||||||||||
Sbjct: 547 ctaattgatgctgag 561
>gnl|LJGI|FS316028 similar to UniRef100_O76313 Cluster: Vitelline envelope receptor
for sperm lysin; n=1; Haliotis kamtschatkana|Rep:
Vitelline envelope receptor for sperm lysin - Haliotis
kamtschatkana (Pinto abalone), partial (9%)
Length = 718
Score = 71.9 bits (36), Expect = 6e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 85 aggatgtgggagatgtgccctatttctgagccagggaagccatttgctgtccagatggtg 144
|||||||||||||||| || || ||||||||||| |||||| |||| || ||| |||||
Sbjct: 544 aggatgtgggagatgtaaccaatatctgagccaggcaagccagttgcagtgcagctggtg 603
Query: 145 ttaattgatgctgagg 160
|||||||||||||||
Sbjct: 604 ctaattgatgctgagg 619
>gnl|LJGI|TC68018 similar to UniRef100_A7P7G9 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 1012
Score = 67.9 bits (34), Expect = 9e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 730 aggttgatgctccaccgtcggaagctactaaatatttgaagt 771
||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 542 aggttgatgctccactgtcggaagctactaaatacttgaagt 583
>gnl|LJGI|BP051187
Length = 521
Score = 63.9 bits (32), Expect = 1e-09
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 85 aggatgtgggagatgtgccctatttctgagccagggaagccatttgctgtccagatggtg 144
|||||||||||||||||||| || | |||||| || |||||| |||| || ||| |||||
Sbjct: 430 aggatgtgggagatgtgcccaatatttgagccgggcaagccacttgcagtgcagctggtg 371
Query: 145 ttaattgatgct 156
|||||||||||
Sbjct: 370 ctaattgatgct 359
>gnl|LJGI|BW598101 weakly similar to UniRef100_A2Q377 Cluster: Nucleic acid-binding,
OB-fold; n=1; Medicago truncatula|Rep: Nucleic
acid-binding, OB-fold - Medicago truncatula (Barrel
medic), partial (6%)
Length = 480
Score = 54.0 bits (27), Expect = 1e-06
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 620 agtttgctaagattaagacattcaaaggagattttgtgcttcaaaatgttatgcatgcta 679
||||||||||| | ||||| || || |||||| |||| || |||||||||||| ||||||
Sbjct: 90 agtttgctaaggtgaagacgtttaagggagatgttgttctacaaaatgttatgaatgcta 149
Query: 680 cca 682
|||
Sbjct: 150 cca 152