Miyakogusa Predicted Gene

Lj1g3v2809470.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2809470.1 tr|B9GR88|B9GR88_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_645504 PE=4
SV=1,37.01,0.00000000000003,coiled-coil,NULL;
seg,NULL,gene.g33621.t1.1
         (468 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69603 weakly similar to UniRef100_Q2HV86 Cluster: Lat...   866   0.0  

>gnl|LJGI|TC69603 weakly similar to UniRef100_Q2HV86 Cluster: Late embryogenesis
           abundant protein; n=1; Medicago truncatula|Rep: Late
           embryogenesis abundant protein - Medicago truncatula
           (Barrel medic), partial (69%)
          Length = 649

 Score =  866 bits (437), Expect = 0.0
 Identities = 454/462 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaggatctaacctagtcacctccctcccaaagtttggtcatgctggagcagcaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  atggcaggatctaacctagtcacctccctcccaaagtttggtcatgctggagcagcaatt 111

                                                                       
Query: 61  gctaaggctcgtgcatggaatactagggtctttgccgctgccacccctagacctatccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gctaaggctcgtgcatggaatactagggtctttgccgctgccacccctagacctatccaa 171

                                                                       
Query: 121 gttccaacttcacatgatcaggaaggctcagtaacctctgatggcctgaacactacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gttccaacttcacatgatcaggaaggctcagtaacctctgatggcctgaacactacagaa 231

                                                                       
Query: 181 acaatcaataacagtttgaacgaaccactgcaagacaaagcttacagctccaatgctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acaatcaataacagtttgaacgaaccactgcaagacaaagcttacagctccaatgctgca 291

                                                                       
Query: 241 gagcatattaataacaaggcaaaagacactgctaatcagatatcnnnnnnngcacaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||       |||||||||
Sbjct: 292 gagcatattaataacaaggcaaaagacactgctaatcagatatcagacaaagcacaaaac 351

                                                                       
Query: 301 attaccgaaaaagcaaagcagacaatgcaagaggcatgggactccactaaaaacaatgcc 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 attactgaaaaagcaaagcagacaatgcaagaggcatgggactccactaaaaacaatgcc 411

                                                                       
Query: 361 aataaggctgcagacaatgtgttgggaaagactcaaaagtctgctgaatatgtcaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aataaggctgcagacaatgtgttgggaaagactcaaaagtctgctgaatatgtcaaagaa 471

                                                     
Query: 421 aatgcagagactgtgaaggagaacatgaacagcaagaacagg 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aatgcagagactgtgaaggagaacatgaacagcaagaacagg 513