Miyakogusa Predicted Gene
- Lj1g3v2682530.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2682530.1 Non Chatacterized Hit- tr|I1N3S1|I1N3S1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7776
PE=,80.35,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding
domain; HELICASE_CTER,Helicase, C-termina,CUFF.29462.1
(3618 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP043794 weakly similar to UniRef100_A2Q217 Cluster: HM... 957 0.0
gnl|LJGI|TC76161 similar to UniRef100_A2Q217 Cluster: HMG-I and ... 502 e-141
gnl|LJGI|FS324888 similar to UniRef100_A2Q217 Cluster: HMG-I and... 460 e-128
gnl|LJGI|TC76337 similar to UniRef100_A2Q217 Cluster: HMG-I and ... 98 5e-19
>gnl|LJGI|BP043794 weakly similar to UniRef100_A2Q217 Cluster: HMG-I and HMG-Y,
DNA-binding; Bromodomain; Helicase, C-terminal; n=1;
Medicago truncatula|Rep: HMG-I and HMG-Y, DNA-binding;
Bromodomain; Helicase, C-terminal - Medicago truncatula
(Barrel medic), partial (15%)
Length = 490
Score = 957 bits (483), Expect = 0.0
Identities = 488/490 (99%)
Strand = Plus / Plus
Query: 2652 caatttaagtggatcttcaacacgaaccactaaaatgactgaaatcatccaaagagggtg 2711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caatttaagtggatcttcaacacgaaccactaaaatgactgaaatcatccaaagagggtg 60
Query: 2712 caagaatgtaattagcaagctccagaggagaatagacaaggatggccagcaagttgtacc 2771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagaatgtaattagcaagctccagaggagaatagacaaggatggccagcaagttgtacc 120
Query: 2772 tttgctgacagcttttttgaagaggattgagaattctgggtacactgctggatctgggaa 2831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttgctgacagcttttttgaagaggattgagaattctgggtacactgctggatctgggaa 180
Query: 2832 aactctgttggatttacgaaagattgatcagcggattgatagattggagtataatggagt 2891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aactctgttggatttacgaaagattgatcagcggattgatagattggagtataatggagt 240
Query: 2892 aatggagcttgtttctgatgtgcagttcatgttgaggagtgcaatgcattcttatggcta 2951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatggagcttgtttctgatgtgcagttcatgttgaggagtgcaatgcattcttatggcta 300
Query: 2952 ctcagaagaggtaaacaatgaagcagaccgggttcataatctcttttttgatatcttgaa 3011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcagaagaggtaaacaatgaagcagaccgggttcataatctcttttttgatatcttgaa 360
Query: 3012 aattgcatttcccaacgtggacttcagagaagcaagaaatggactttcttcccctcccca 3071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattgcatttcccaacgtggacttcagagaagcaagaaatggactttcttcccctcccca 420
Query: 3072 agtttctgccagtgctgtggcatccccaaggcaggtgactgttggcccaagcaagaggaa 3131
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 421 agtttctgccagtgctgtggcatccccaangcaggtgactgtgggcccaagcaagaggaa 480
Query: 3132 cagggtgatg 3141
||||||||||
Sbjct: 481 cagggtgatg 490
>gnl|LJGI|TC76161 similar to UniRef100_A2Q217 Cluster: HMG-I and HMG-Y, DNA-binding;
Bromodomain; Helicase, C-terminal; n=1; Medicago
truncatula|Rep: HMG-I and HMG-Y, DNA-binding;
Bromodomain; Helicase, C-terminal - Medicago truncatula
(Barrel medic), partial (3%)
Length = 621
Score = 502 bits (253), Expect = e-141
Identities = 256/257 (99%)
Strand = Plus / Minus
Query: 3362 aaaaatcattggtgaagacaaggaccggatcagctggtcctgtctcaccaccaagcatgg 3421
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 aaaaatcattggtgaagacaaggaccggatcatctggtcctgtctcaccaccaagcatgg 562
Query: 3422 gtcctgctataaaaagtccaaggtcaggttcaaaccccagagattctcggccggttcaac 3481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcctgctataaaaagtccaaggtcaggttcaaaccccagagattctcggccggttcaac 502
Query: 3482 aggctgcgcaagcagcgggacgggttggccagccatctcagcaaccaaatgggtctggcg 3541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctgcgcaagcagcgggacgggttggccagccatctcagcaaccaaatgggtctggcg 442
Query: 3542 ggtcactcggctgggccaacccggtgaagcgccttagatcagattctggtaagaggagac 3601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcactcggctgggccaacccggtgaagcgccttagatcagattctggtaagaggagac 382
Query: 3602 caagccatatgtagatt 3618
|||||||||||||||||
Sbjct: 381 caagccatatgtagatt 365
>gnl|LJGI|FS324888 similar to UniRef100_A2Q217 Cluster: HMG-I and HMG-Y, DNA-binding;
Bromodomain; Helicase, C-terminal; n=1; Medicago
truncatula|Rep: HMG-I and HMG-Y, DNA-binding;
Bromodomain; Helicase, C-terminal - Medicago truncatula
(Barrel medic), partial (14%)
Length = 646
Score = 460 bits (232), Expect = e-128
Identities = 533/630 (84%), Gaps = 15/630 (2%)
Strand = Plus / Plus
Query: 1320 ggaggatgaacttgtgggtaaggatcgctatataggatccattgagagccttataaggaa 1379
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 20 ggaggatgaacttgcaactaaggatcgctatataggatccattgagagcctcataaggaa 79
Query: 1380 caatattcaacaatataagatagatatggctgatgaggttattaatgctggacgttttga 1439
||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct: 80 caatattcagcaatataagatagatatggctgatgaggtcataaatgctggacggttcga 139
Query: 1440 tcaaaggactacacatgaagagagacgtttgactttggagacattattgcatgatgaaga 1499
|||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 140 tcaaagaacaacacatgaagaaagacgtttgactttggagacattattacatgacgaaga 199
Query: 1500 aaggtatcaagaaactctccataatgttccttcgctgcaggaggtgaatcgcatgattgc 1559
|||| |||||||||| ||||| |||| || || |||||||||| ||||||||||||||
Sbjct: 200 gaggtgtcaagaaactgtccatgatgtcccctcattgcaggaggtaaatcgcatgattgc 259
Query: 1560 taggaatgaagaggaagttgaattgtttgatcaaatggatgaagaagaagattgggttga 1619
||||| |||||| ||||||||| ||||||| |||||||| || ||| ||||||| ||||
Sbjct: 260 taggagtgaagaagaagttgaactgtttgaccaaatggacgatgaactagattggattga 319
Query: 1620 ggagatgacgcagtatgatcaggtgcctaggtggcttcgagccactacaaaagaatttaa 1679
|| ||||| | || || ||| | |||| ||||||||||||| ||||| |||| | ||
Sbjct: 320 tgaaatgacacggtttgttcatatacctaaatggcttcgagccaatacaagagaagtgaa 379
Query: 1680 tgctgccattgctgctttatcaaaaagaccatcaaagaaaactgttttgggtggtggtac 1739
|||||| ||||||||||||||||||| |||||||||||| ||| | ||||||||| |||
Sbjct: 380 tgctgcgattgctgctttatcaaaaaaaccatcaaagaacactttattgggtggtagtat 439
Query: 1740 tggcttggaatccagtgaaat---ttctgaaaaaagaaggggacggccaaagggaaaaaa 1796
|||| ||||| | ||||| | |||||||| |||||| ||| | || ||||| |||
Sbjct: 440 tggcatggaagcaggtgaacttggttctgaaagaagaagaggaagacccaaggg---aaa 496
Query: 1797 tcatcctagttataaagagttggaagatgaaaat---gaatactctgaagcaagctctga 1853
| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 497 gcgtcctagttataaagagttggaagatgaagatttggaatactccgaagcaagctctga 556
Query: 1854 agacagaaatggatattctgcacat---gaaggggagattgcagagtctgaagatgatgg 1910
|| ||||||||||| ||||||| |||||||| || | ||| | |||||||||| |
Sbjct: 557 tgaaagaaatggata---tgcacatgaggaaggggaaatgggagaatttgaagatgatag 613
Query: 1911 gtttattggggctgatggatctcagcccat 1940
|| ||| || ||||||||| |||||||||
Sbjct: 614 gtatatcggagctgatggagatcagcccat 643
>gnl|LJGI|TC76337 similar to UniRef100_A2Q217 Cluster: HMG-I and HMG-Y, DNA-binding;
Bromodomain; Helicase, C-terminal; n=1; Medicago
truncatula|Rep: HMG-I and HMG-Y, DNA-binding;
Bromodomain; Helicase, C-terminal - Medicago truncatula
(Barrel medic), partial (6%)
Length = 687
Score = 97.6 bits (49), Expect = 5e-19
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 3314 ctcatccaggtgaactggtggtatgcaagaagaaaagaaatgacagggaaaaatcattgg 3373
||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct: 143 ctcatcccggtgaactggttgtatgcaagaagaaaagaaatgacagggagaaatcactgg 202
Query: 3374 tgaag 3378
|||||
Sbjct: 203 tgaag 207