Miyakogusa Predicted Gene
- Lj1g3v2671420.4
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2671420.4 tr|C0Z2X2|C0Z2X2_ARATH AT2G45950 protein
OS=Arabidopsis thaliana GN=AT2G45950 PE=2 SV=1,75,4e-17,no
description,BTB/POZ fold; Found in Skp1 protein family,SKP1 component;
Skp1,SKP1 component, dimer,CUFF.29409.4
(477 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC593786 similar to UniRef100_Q2HTK9 Cluster: SKP1 comp... 733 0.0
gnl|LJGI|BP033484 similar to UniRef100_Q2HTK9 Cluster: SKP1 comp... 254 4e-67
gnl|LJGI|FS318303 similar to UniRef100_Q2HTK9 Cluster: SKP1 comp... 244 4e-64
>gnl|LJGI|DC593786 similar to UniRef100_Q2HTK9 Cluster: SKP1 component; n=1; Medicago
truncatula|Rep: SKP1 component - Medicago truncatula
(Barrel medic), partial (41%)
Length = 598
Score = 733 bits (370), Expect = 0.0
Identities = 370/370 (100%)
Strand = Plus / Plus
Query: 1 atggcagaaatcgacaagggggtaattaaacccgagatgttgaagccctatgtttggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atggcagaaatcgacaagggggtaattaaacccgagatgttgaagccctatgtttggctt 288
Query: 61 cagacttcagatggttcaatccaacaagtggaacatgaagttgcaacagtttgccctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagacttcagatggttcaatccaacaagtggaacatgaagttgcaacagtttgccctctg 348
Query: 121 atttgtcaagaaataatacacaaaggcactggatcttccaagaattgtgcaatatctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atttgtcaagaaataatacacaaaggcactggatcttccaagaattgtgcaatatctctt 408
Query: 181 cctcaagaagtcagtcctgcgatgctgagcttaattcttgattattgccgttttcatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cctcaagaagtcagtcctgcgatgctgagcttaattcttgattattgccgttttcatcaa 468
Query: 241 cgacagggtcgctcaaacaaggaaaagaagtcctatgatgagaaattcattaagaaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cgacagggtcgctcaaacaaggaaaagaagtcctatgatgagaaattcattaagaaagac 528
Query: 301 acaaaccagctctttgggttagttaaagctgcagacagccttcagttgaagtcattggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acaaaccagctctttgggttagttaaagctgcagacagccttcagttgaagtcattggtt 588
Query: 361 gatcttacaa 370
||||||||||
Sbjct: 589 gatcttacaa 598
>gnl|LJGI|BP033484 similar to UniRef100_Q2HTK9 Cluster: SKP1 component; n=1; Medicago
truncatula|Rep: SKP1 component - Medicago truncatula
(Barrel medic), partial (41%)
Length = 540
Score = 254 bits (128), Expect = 4e-67
Identities = 290/344 (84%)
Strand = Plus / Plus
Query: 25 attaaacccgagatgttgaagccctatgtttggcttcagacttcagatggttcaatccaa 84
|||||||| |||||| ||||||| ||||| |||||||| || || |||| ||||||||||
Sbjct: 197 attaaacctgagatgatgaagccttatgtatggcttcaaacgtccgatgattcaatccaa 256
Query: 85 caagtggaacatgaagttgcaacagtttgccctctgatttgtcaagaaataatacacaaa 144
||||||||||| ||| |||||| ||||||| ||||| || |||||||| ||||| |||
Sbjct: 257 caagtggaacaagaaattgcaatgttttgcccactgatatgccaagaaattatacaaaaa 316
Query: 145 ggcactggatcttccaagaattgtgcaatatctcttcctcaagaagtcagtcctgcgatg 204
||||| |||||||||||||| |||||||||| |||||||||| ||||||||||||| |||
Sbjct: 317 ggcaccggatcttccaagaactgtgcaatatgtcttcctcaacaagtcagtcctgctatg 376
Query: 205 ctgagcttaattcttgattattgccgttttcatcaacgacagggtcgctcaaacaaggaa 264
|||||||||||||||||||||| || || |||||| || || |||||||||||||||
Sbjct: 377 ttgagcttaattcttgattattgtcgattccatcaagtaccaggccgctcaaacaaggaa 436
Query: 265 aagaagtcctatgatgagaaattcattaagaaagacacaaaccagctctttgggttagtt 324
||||| ||||||||||||||| ||| || ||||||| | ||||| || ||||
Sbjct: 437 cgaaagtcttatgatgagaaattcgttaggatagacacagaaaggctctgtgagttaacg 496
Query: 325 aaagctgcagacagccttcagttgaagtcattggttgatcttac 368
|||||||||||||||||||| ||| || |||||||||||||
Sbjct: 497 tctgctgcagacagccttcagttaaagccactggttgatcttac 540
>gnl|LJGI|FS318303 similar to UniRef100_Q2HTK9 Cluster: SKP1 component; n=1; Medicago
truncatula|Rep: SKP1 component - Medicago truncatula
(Barrel medic), partial (37%)
Length = 666
Score = 244 bits (123), Expect = 4e-64
Identities = 240/279 (86%)
Strand = Plus / Plus
Query: 25 attaaacccgagatgttgaagccctatgtttggcttcagacttcagatggttcaatccaa 84
|||||||| |||||| ||||||| ||||| |||||||| || || |||| ||||||||||
Sbjct: 360 attaaacctgagatgatgaagccttatgtatggcttcaaacgtccgatgattcaatccaa 419
Query: 85 caagtggaacatgaagttgcaacagtttgccctctgatttgtcaagaaataatacacaaa 144
||||||||||| ||| |||||| ||||||| ||||| || |||||||| ||||| |||
Sbjct: 420 caagtggaacaagaaattgcaatgttttgcccactgatatgccaagaaattatacaaaaa 479
Query: 145 ggcactggatcttccaagaattgtgcaatatctcttcctcaagaagtcagtcctgcgatg 204
||||| |||||||||||||| |||||||||| |||||||||| ||||||||||||| |||
Sbjct: 480 ggcaccggatcttccaagaactgtgcaatatgtcttcctcaacaagtcagtcctgctatg 539
Query: 205 ctgagcttaattcttgattattgccgttttcatcaacgacagggtcgctcaaacaaggaa 264
|||||||||||||||||||||| || || |||||| || || |||||||||||||||
Sbjct: 540 ttgagcttaattcttgattattgtcgattccatcaagtaccaggccgctcaaacaaggaa 599
Query: 265 aagaagtcctatgatgagaaattcattaagaaagacaca 303
||||| ||||||||||||||| ||| || |||||||
Sbjct: 600 cgaaagtcttatgatgagaaattcgttaggatagacaca 638