Miyakogusa Predicted Gene

Lj1g3v2635110.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2635110.1 Non Chatacterized Hit- tr|B8BNV9|B8BNV9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,40.87,0.00000000000003,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.29418.1
         (507 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC58435 weakly similar to UniRef100_A7NY43 Cluster: Chr...   331   2e-90

>gnl|LJGI|TC58435 weakly similar to UniRef100_A7NY43 Cluster: Chromosome chr6
           scaffold_3, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr6 scaffold_3, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (49%)
          Length = 1347

 Score =  331 bits (167), Expect = 2e-90
 Identities = 272/307 (88%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgcaacatgtggagacaataaccagctctgaggtcacctttgatcttgtgcattccattg 61
           |||||| |||||||||||||| |||||||||||||||| ||||| ||||||| ||| |||
Sbjct: 250 tgcaacgtgtggagacaataagcagctctgaggtcacccttgatattgtgcaatcctttg 309

                                                                       
Query: 62  tggattctggttcaagtcgggcatctgaatcaaagtcaaaaactgaggaaaggaggaact 121
           ||||| ||||||||||||| ||||||||||| |||||||| | |||| |||||| || ||
Sbjct: 310 tggatcctggttcaagtcgtgcatctgaatctaagtcaaacattgagcaaaggaagagct 369

                                                                       
Query: 122 tcattaaaaaagatgattgtgcacggaagcaagaccagctcttatttaaagctaaacaag 181
           || | ||||||||| || |||||||||||||||| || ||||||| ||||||||||||||
Sbjct: 370 tcttcaaaaaagataatcgtgcacggaagcaagatcaactcttatctaaagctaaacaag 429

                                                                       
Query: 182 atatagagtctttagcaaaagatactcgctttgaacaaatatggaagagcatgaagggaa 241
           ||| ||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct: 430 ataaagagtctctagcaaaagatgctcgctttgaacaaatatggaagagtaggaagggaa 489

                                                                       
Query: 242 acaaagggacagaacatgaaaaagcattactcgaaatatgcaacttctatgatattgttc 301
           |||||| |||||||||||| || || ||||  |||||||||||||||||||| ||||| |
Sbjct: 490 acaaagagacagaacatgagaaggcgttacaagaaatatgcaacttctatgacattgtcc 549

                  
Query: 302 gtattga 308
           || ||||
Sbjct: 550 gtgttga 556



 Score =  103 bits (52), Expect = 1e-21
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                       
Query: 436 tatgtttatgacttctacactgtgaaggatgagatgcacgttgaagattcttcatgttct 495
           |||||||||||| ||||||||||||| |||||| || |||||||||||||||||| ||||
Sbjct: 690 tatgtttatgacctctacactgtgaatgatgaggtggacgttgaagattcttcatattct 749

                       
Query: 496 tatccattagtt 507
           ||||||||||||
Sbjct: 750 tatccattagtt 761