Miyakogusa Predicted Gene

Lj1g3v2628720.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2628720.1 tr|Q9M2D9|Q9M2D9_ARATH At3g61250 OS=Arabidopsis
thaliana GN=T20K12.150 PE=2 SV=1,44.87,3e-19, ,CUFF.29359.1
         (457 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78138 similar to UniRef100_A7PZA1 Cluster: Chromosome...   400   e-111
gnl|LJGI|TC79924 similar to UniRef100_A7PZA1 Cluster: Chromosome...    52   3e-06

>gnl|LJGI|TC78138 similar to UniRef100_A7PZA1 Cluster: Chromosome chr15 scaffold_40,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr15 scaffold_40, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (12%)
          Length = 639

 Score =  400 bits (202), Expect = e-111
 Identities = 202/202 (100%)
 Strand = Plus / Plus

                                                                       
Query: 256 ccatttggatcctcaaacaatgctgtgaaacaagagttgttgtgtgctgaagaagatgtg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccatttggatcctcaaacaatgctgtgaaacaagagttgttgtgtgctgaagaagatgtg 60

                                                                       
Query: 316 gttcagcatcatgggtctgattcatcatgctctaatgacttggaggactcatcagacact 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttcagcatcatgggtctgattcatcatgctctaatgacttggaggactcatcagacact 120

                                                                       
Query: 376 gctttgcagctcttactagattttcctatctacaatgacatgagcttcttagaaggaaac 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gctttgcagctcttactagattttcctatctacaatgacatgagcttcttagaaggaaac 180

                                 
Query: 436 tcttttgtttgtcccctctagc 457
           ||||||||||||||||||||||
Sbjct: 181 tcttttgtttgtcccctctagc 202


>gnl|LJGI|TC79924 similar to UniRef100_A7PZA1 Cluster: Chromosome chr15 scaffold_40,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr15 scaffold_40, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (41%)
          Length = 852

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 1   atggctcaatgggaaggtgcaaggcttgaagcagaggcaaggctttcaag 50
           |||||||| |||||  |||||||||||||||| ||||| ||||| |||||
Sbjct: 505 atggctcagtgggagagtgcaaggcttgaagctgaggccaggctctcaag 554



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 88  ttcctccgcatgtggaactctgaaattgga 117
           |||||||||||||||||||||||| |||||
Sbjct: 607 ttcctccgcatgtggaactctgaagttgga 636