Miyakogusa Predicted Gene

Lj1g3v2546260.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2546260.1 Non Chatacterized Hit- tr|A3AWQ0|A3AWQ0_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,31.9,8e-19,seg,NULL; DUF1191,Protein of unknown function
DUF1191,CUFF.29139.1
         (936 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57269 weakly similar to UniRef100_A7Q9W0 Cluster: Chr...   113   2e-24

>gnl|LJGI|TC57269 weakly similar to UniRef100_A7Q9W0 Cluster: Chromosome chr8
           scaffold_68, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_68, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (77%)
          Length = 1348

 Score =  113 bits (57), Expect = 2e-24
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                       
Query: 836 tgggagaacctcttcaaatggcctcagttggggatacaaaagcacctgctgcaacagtta 895
           |||| ||| ||||||| |||||||| || ||||||||||||||||| || ||||||||||
Sbjct: 884 tgggtgaagctcttcacatggcctctgtcggggatacaaaagcaccggccgcaacagtta 943

                                                
Query: 896 caagaacacaaccaacccttgaacatgaatatgcacc 932
           |  |||||||||| |||||||||||||||||||||||
Sbjct: 944 ctcgaacacaacctacccttgaacatgaatatgcacc 980



 Score =  107 bits (54), Expect = 1e-22
 Identities = 105/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 520 gctcctcatggtgctgttgcagaatgtgtttggtttgatttgaagggttcttccagtttc 579
           |||||||| ||||| |||||  ||||||| |||||||||||  |||||||||||| ||||
Sbjct: 556 gctcctcacggtgccgttgcgaaatgtgtctggtttgatttacagggttcttccaatttc 615

                                                                       
Query: 580 agcattgtaacaggaggcaacacatgttctacttctcaacagggtcatttctcaatagtg 639
           |||| ||||||||||||| ||||||| ||||| ||   ||||||||||| ||| ||||||
Sbjct: 616 agcaatgtaacaggaggcgacacatgctctacctcaagacagggtcattactctatagtg 675

             
Query: 640 gt 641
           ||
Sbjct: 676 gt 677