Miyakogusa Predicted Gene
- Lj1g3v2546210.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2546210.1 Non Chatacterized Hit- tr|I1L6X0|I1L6X0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8009 PE=,92.55,0,K
homology RNA-binding domain,K Homology domain; KH_1,K Homology domain,
type 1; RNA-BINDING PROTEIN,CUFF.29135.1
(846 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67660 similar to UniRef100_A7Q9W1 Cluster: Chromosome... 1029 0.0
gnl|LJGI|TC57961 similar to UniRef100_A7Q9W1 Cluster: Chromosome... 731 0.0
gnl|LJGI|TC79709 similar to UniRef100_A7Q9W1 Cluster: Chromosome... 531 e-150
gnl|LJGI|TC67099 homologue to UniRef100_A7Q9W1 Cluster: Chromoso... 161 9e-39
gnl|LJGI|TC67728 similar to UniRef100_A7Q9W1 Cluster: Chromosome... 157 1e-37
gnl|LJGI|TC72746 similar to UniRef100_A7Q9W1 Cluster: Chromosome... 133 2e-30
>gnl|LJGI|TC67660 similar to UniRef100_A7Q9W1 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (64%)
Length = 663
Score = 1029 bits (519), Expect = 0.0
Identities = 547/553 (98%), Gaps = 5/553 (0%)
Strand = Plus / Plus
Query: 1 atgtcaggcttgtataatcccaactattcacctgctagagcagcttctcctcagattagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 atgtcaggcttgtataatcccaactattcacctgctagagcagcttctcctcagattagg 173
Query: 61 agcaccccagaagacagtcagtacctacaagagttgctggcagagcatcaaaagcttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 agcaccccagaagacagtcagtacctacaagagttgctggcagagcatcaaaagcttgga 233
Query: 121 ccctttacacaagtgcttcccatatgcaaccgcctgataaatcaagaaatattaagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ccctttacacaagtgcttcccatatgcaaccgcctgataaatcaagaaatattaagagtt 293
Query: 181 tctagaatgttgtccaaccaaggttttggtgactttgatagactgcggcatagaagccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tctagaatgttgtccaaccaaggttttggtgactttgatagactgcggcatagaagccct 353
Query: 241 agtcctatggcttcttcaaacatcatgtcaaatgtcagtgggacaggtttgggtggatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agtcctatggcttcttcaaacatcatgtcaaatgtcagtgggacaggtttgggtggatgg 413
Query: 301 aatagtcttcagcaggagcagagatttagtggaccccctggaatgacaatggactggcaa 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aatagtcttcagcagg---agagatttagtggaccccctggaatgacaatggactggcaa 470
Query: 361 ggtgcccctgcaagccctagttcatttactgttaagagaatcttgcgcctggaaattcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggtgcccctgcaagccctagttcatttactgttaagagaatcttgcgcctggaaattcca 530
Query: 421 gtagatacataccc-taatttcaattttg-ttggaagacttctgggacctagaggcaatt 478
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 531 gtagatacatacccgtaatttcaattttgtttggaacacttctgggacctagaggcaatt 590
Query: 479 ctttgaaacgggtagaagctactactggttgccgtgtatatattagaggaaaaggatcca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctttgaaacgggtagaagctactactggttgccgtgtatatattagaggaaaaggatcca 650
Query: 539 taaaggatcctga 551
|||||||||||||
Sbjct: 651 taaaggatcctga 663
>gnl|LJGI|TC57961 similar to UniRef100_A7Q9W1 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (91%)
Length = 1268
Score = 731 bits (369), Expect = 0.0
Identities = 644/735 (87%), Gaps = 3/735 (0%)
Strand = Plus / Plus
Query: 90 agagttgctggcagagcatcaaaagcttggaccctttacacaagtgcttcccatatgcaa 149
||||||||||||||||| ||||||||||||||| || | ||||||||||| | ||||||
Sbjct: 148 agagttgctggcagagcgtcaaaagcttggacctttcatgcaagtgcttcctacatgcaa 207
Query: 150 ccgcctgataaatcaagaaatattaagagtttctagaatgttgtccaaccaaggttttgg 209
||||| | |||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct: 208 tcgcctcttgaatcaagaaatattaagagtctctggaatgttgtccaatcaaggttttgg 267
Query: 210 tgactttgatagactgcggcatagaagccctagtcctatggcttcttcaaacatcatgtc 269
||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct: 268 tgactttgatagactgcggcatagaagccctagtcctatggctccttcgaacctcatgtc 327
Query: 270 aaatgtcagtgggacaggtttgggtggatggaatagtcttcagcaggagcagagatttag 329
|||||| ||||||||| ||||||||||||||| |||||||||||||| ||||| |
Sbjct: 328 taatgtccctgggacaggattgggtggatggaatggtcttcagcaggag---agattatg 384
Query: 330 tggaccccctggaatgacaatggactggcaaggtgcccctgcaagccctagttcatttac 389
|||| | ||||||||||||||||||||||||| |||||||||||| |||| ||||| ||
Sbjct: 385 tggaactcctggaatgacaatggactggcaagttgcccctgcaagtcctacttcatacac 444
Query: 390 tgttaagagaatcttgcgcctggaaattccagtagatacataccctaatttcaattttgt 449
||||| || || || ||| |||||||||| || ||||||| ||| ||||||||||||||
Sbjct: 445 tgttagaaggatattacgcttggaaattcctgttgatacattccccaatttcaattttgt 504
Query: 450 tggaagacttctgggacctagaggcaattctttgaaacgggtagaagctactactggttg 509
||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||
Sbjct: 505 tggaagacttctgggacctagaggcaattctctgaaacgggtagaagcaacaacaggttg 564
Query: 510 ccgtgtatatattagaggaaaaggatccataaaggatcctgacaaggaagagaaattacg 569
| | || | ||||||||||| |||||| ||||||||||| |||||||||||||| ||| |
Sbjct: 565 cagggtgtttattagaggaacaggatctataaaggatccagacaaggaagagaagttaag 624
Query: 570 aggaagaccaggctatgagcatctcaatgaacctctacacattttgattgaggctgattt 629
||||| ||||||||||||||||||| |||| || || ||||| ||||| |||||||||||
Sbjct: 625 aggaaaaccaggctatgagcatctctatgagccgctccacatattgatcgaggctgattt 684
Query: 630 acctgctaatgttgtggatgtaaggctcaggcaggctcaggaaattatagaagaactgct 689
|||||||||| |||| || | ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 685 acctgctaatattgttgacatcaggcttaggcaggctcaggaaatcatagaagaactgct 744
Query: 690 caagcccgtggatgagtcacaggactttatcaagaggcagcagctgcgcgaattagctat 749
||| || || |||||||||||||||| | |||||| ||||||| |||| |||||||| |
Sbjct: 745 caaacctgtcgatgagtcacaggactatgtcaagaagcagcagttgcgggaattagcatt 804
Query: 750 gctgaattcaaatttcagagaagagtcaccagggccaagtggcagtgtgtccccattcaa 809
||||||||||||||| ||||||||| || ||||||||||| ||||| || ||||| ||
Sbjct: 805 gctgaattcaaatttaagagaagagagtcctgggccaagtggtagtgtatctccatttaa 864
Query: 810 ttctagtggaatgaa 824
|||| ||||||||||
Sbjct: 865 ttctggtggaatgaa 879
>gnl|LJGI|TC79709 similar to UniRef100_A7Q9W1 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 421
Score = 531 bits (268), Expect = e-150
Identities = 275/276 (99%), Gaps = 1/276 (0%)
Strand = Plus / Plus
Query: 1 atgtcaggcttgtataatcccaactattcacctgctagagcagcttctcctcagattagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atgtcaggcttgtataatcccaactattcacctgctagagcagcttctcctcagattagg 205
Query: 61 agcaccccagaagacagtcagtacctacaagagttgctggcagagcatcaaaagcttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agcaccccagaagacagtcagtacctacaagagttgctggcagagcatcaaaagcttgga 265
Query: 121 ccctttacaca-agtgcttcccatatgcaaccgcctgataaatcaagaaatattaagagt 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccctttacacacagtgcttcccatatgcaaccgcctgataaatcaagaaatattaagagt 325
Query: 180 ttctagaatgttgtccaaccaaggttttggtgactttgatagactgcggcatagaagccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttctagaatgttgtccaaccaaggttttggtgactttgatagactgcggcatagaagccc 385
Query: 240 tagtcctatggcttcttcaaacatcatgtcaaatgt 275
||||||||||||||||||||||||||||||||||||
Sbjct: 386 tagtcctatggcttcttcaaacatcatgtcaaatgt 421
>gnl|LJGI|TC67099 homologue to UniRef100_A7Q9W1 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 702
Score = 161 bits (81), Expect = 9e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 766 agagaagagtcaccagggccaagtggcagtgtgtccccattcaattctagtggaatgaag 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagaagagtcaccagggccaagtggcagtgtgtccccattcaattctagtggaatgaag 60
Query: 826 cgtgcaaaaccgggtcgctaa 846
|||||||||||||||||||||
Sbjct: 61 cgtgcaaaaccgggtcgctaa 81
>gnl|LJGI|TC67728 similar to UniRef100_A7Q9W1 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (79%)
Length = 1450
Score = 157 bits (79), Expect = 1e-37
Identities = 274/339 (80%)
Strand = Plus / Plus
Query: 436 aatttcaattttgttggaagacttctgggacctagaggcaattctttgaaacgggtagaa 495
||||||||||| ||||| || ||||| || ||| | || ||||| |||| || || ||
Sbjct: 610 aatttcaatttcgttgggaggcttcttggccctcggggtaattcactgaagcgagtcgag 669
Query: 496 gctactactggttgccgtgtatatattagaggaaaaggatccataaaggatcctgacaag 555
||||| || ||||||||||||| ||||||||| |||| || ||||| || || || |||
Sbjct: 670 gctaccacaggttgccgtgtatttattagagggcaaggttcaataaaagacccagataag 729
Query: 556 gaagagaaattacgaggaagaccaggctatgagcatctcaatgaacctctacacattttg 615
|||||| ||| | |||| |||||||||||||| || |||||||| || ||| |||||
Sbjct: 730 gaagaggttttaaggggaaagccaggctatgagcacctgaatgaaccactgcacgttttg 789
Query: 616 attgaggctgatttacctgctaatgttgtggatgtaaggctcaggcaggctcaggaaatt 675
||||||||||| |||||| |||||||| ||| ||||||| ||||| || || |||||
Sbjct: 790 attgaggctgaactacctgtcaatgttgttgatataaggctgaggcaagcacaagaaatc 849
Query: 676 atagaagaactgctcaagcccgtggatgagtcacaggactttatcaagaggcagcagctg 735
|||||| | || ||||| |||| ||||||| |||||||||| ||||||||| || |||
Sbjct: 850 atagaaaatctactcaaacccgcggatgagacacaggacttctacaagaggcaacaactg 909
Query: 736 cgcgaattagctatgctgaattcaaatttcagagaagag 774
| ||| | || ||||||||||| |||||||||||||||
Sbjct: 910 agagaacttgccatgctgaattccaatttcagagaagag 948
>gnl|LJGI|TC72746 similar to UniRef100_A7Q9W1 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 678
Score = 133 bits (67), Expect = 2e-30
Identities = 196/239 (82%)
Strand = Plus / Plus
Query: 493 gaagctactactggttgccgtgtatatattagaggaaaaggatccataaaggatcctgac 552
|||||||| || ||||||||||||||||| ||||| ||||| || || ||||| | |||
Sbjct: 8 gaagctaccacgggttgccgtgtatatatcagagggaaaggttcaattaaggacctagac 67
Query: 553 aaggaagagaaattacgaggaagaccaggctatgagcatctcaatgaacctctacacatt 612
|||||||| ||| | ||||| || ||||||||||| || | |||||| || ||||||
Sbjct: 68 aaggaagacttgttaaggggaaggccgggctatgagcacctgagtgaaccgcttcacatt 127
Query: 613 ttgattgaggctgatttacctgctaatgttgtggatgtaaggctcaggcaggctcaggaa 672
|||||||| ||||| ||||||| ||| |||| ||||||||| | ||||| || ||||||
Sbjct: 128 ttgattgaagctgagctacctgccaatattgttgatgtaaggttgaggcaagcacaggaa 187
Query: 673 attatagaagaactgctcaagcccgtggatgagtcacaggactttatcaagaggcagca 731
|| || ||||| | || |||||||||||||| |||||||||||| |||||| |||||
Sbjct: 188 atcatcgaagagatacttaagcccgtggatgaatcacaggacttttacaagagacagca 246