Miyakogusa Predicted Gene

Lj1g3v2534960.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2534960.1 Non Chatacterized Hit- tr|I1HSU9|I1HSU9_BRADI
Uncharacterized protein (Fragment) OS=Brachypodium
dis,36.81,0.00000000000002,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL,NODE_42898_length_1365_cov_14.850550.path1.1
         (948 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC594870                                                     103   2e-21
gnl|LJGI|FS359894 weakly similar to UniRef100_Q5QLZ3 Cluster: Ga...    66   4e-10
gnl|LJGI|FS361440 weakly similar to UniRef100_Q5QLZ3 Cluster: Ga...    66   4e-10

>gnl|LJGI|DC594870 
          Length = 547

 Score =  103 bits (52), Expect = 2e-21
 Identities = 85/96 (88%)
 Strand = Plus / Plus

                                                                       
Query: 322 gttgttccacctgattttccccttgaaacaccaccaaacctcagaacaacattgcctaat 381
           ||||||||| ||||||| |||| ||| || ||||| ||||| ||||||||||||||| ||
Sbjct: 254 gttgttccatctgatttcccccatgatacgccacctaaccttagaacaacattgcctgat 313

                                               
Query: 382 agacctgtctctgcagggaggtctcgtcccggtgct 417
           |||||| |||||||||| ||||| ||||||||||||
Sbjct: 314 agacctctctctgcaggcaggtcccgtcccggtgct 349


>gnl|LJGI|FS359894 weakly similar to UniRef100_Q5QLZ3 Cluster: Gastric mucin-like
           protein; n=1; Oryza sativa Japonica Group|Rep: Gastric
           mucin-like protein - Oryza sativa subsp. japonica
           (Rice), partial (9%)
          Length = 619

 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 826 ctattgcgtaaagaagactggagcaacacaaactggctgcatagtggtgatgagaagtgt 885
           ||||||| ||||||||| | ||  |||||||||||||||||||||| |||||| || |||
Sbjct: 458 ctattgcttaaagaagatttgaagaacacaaactggctgcatagtgctgatgataaatgt 399

                                            
Query: 886 gatcaagggcacatatttgataagggatttgag 918
           ||  |||    |||||||||||| |||||||||
Sbjct: 398 gacgaagcttccatatttgataacggatttgag 366


>gnl|LJGI|FS361440 weakly similar to UniRef100_Q5QLZ3 Cluster: Gastric mucin-like
           protein; n=1; Oryza sativa Japonica Group|Rep: Gastric
           mucin-like protein - Oryza sativa subsp. japonica
           (Rice), partial (9%)
          Length = 648

 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 826 ctattgcgtaaagaagactggagcaacacaaactggctgcatagtggtgatgagaagtgt 885
           ||||||| ||||||||| | ||  |||||||||||||||||||||| |||||| || |||
Sbjct: 420 ctattgcttaaagaagatttgaagaacacaaactggctgcatagtgctgatgataaatgt 361

                                            
Query: 886 gatcaagggcacatatttgataagggatttgag 918
           ||  |||    |||||||||||| |||||||||
Sbjct: 360 gacgaagcttccatatttgataacggatttgag 328