Miyakogusa Predicted Gene
- Lj1g3v2534840.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2534840.1 Non Chatacterized Hit- tr|E0W1S0|E0W1S0_PEDHC
Transcription initiation factor TFIID subunit,
putativ,52.17,2e-19,TAFII28,TAFII28-like protein; no
description,Histone-fold; Histone-fold,Histone-fold; SUBFAMILY NOT
,NODE_22423_length_461_cov_104.694145.path1.1
(330 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76251 similar to UniRef100_A7QK63 Cluster: Chromosome... 654 0.0
gnl|LJGI|TC78047 similar to UniRef100_Q0JKE2 Cluster: Os01g06804... 190 4e-48
>gnl|LJGI|TC76251 similar to UniRef100_A7QK63 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (78%)
Length = 1223
Score = 654 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus
Query: 1 atggccaagatgcaggctattttgtcacaattcactgaagaacagatgagcagatatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atggccaagatgcaggctattttgtcacaattcactgaagaacagatgagcagatatgag 572
Query: 61 tcttttagaagggctggattccagaaagctaacatgaaaaggttattagcaagcatcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcttttagaagggctggattccagaaagctaacatgaaaaggttattagcaagcatcact 632
Query: 121 gggacccagaaaattactataccaataacaattgtagtatcagggattgcaaaaatgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gggacccagaaaattactataccaataacaattgtagtatcagggattgcaaaaatgttt 692
Query: 181 gttggtgaagttgtggaaacagctagaatagttatcaaagagaggaaggaatctggacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gttggtgaagttgtggaaacagctagaatagttatcaaagagaggaaggaatctggacca 752
Query: 241 atccggccttgtcatctgagagaagcatatagacgactaaagcttgaagggaaagtcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 atccggccttgtcatctgagagaagcatatagacgactaaagcttgaagggaaagtcttt 812
Query: 301 aagagatcagtccctaggcttttccggtaa 330
||||||||||||||||||||||||||||||
Sbjct: 813 aagagatcagtccctaggcttttccggtaa 842
>gnl|LJGI|TC78047 similar to UniRef100_Q0JKE2 Cluster: Os01g0680400 protein; n=2;
Oryza sativa Japonica Group|Rep: Os01g0680400 protein -
Oryza sativa subsp. japonica (Rice), partial (17%)
Length = 399
Score = 190 bits (96), Expect = 4e-48
Identities = 102/104 (98%)
Strand = Plus / Plus
Query: 227 aggaatctggaccaatccggccttgtcatctgagagaagcatatagacgactaaagcttg 286
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 20 aggaatctggacctatccggccatgtcatctgagagaagcatatagacgactaaagcttg 79
Query: 287 aagggaaagtctttaagagatcagtccctaggcttttccggtaa 330
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aagggaaagtctttaagagatcagtccctaggcttttccggtaa 123