Miyakogusa Predicted Gene

Lj1g3v2446010.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2446010.1 Non Chatacterized Hit- tr|B6TFZ3|B6TFZ3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2 SV=1,41.98,3e-19,no
description,Helix-loop-helix domain; coiled-coil,NULL,CUFF.29025.1
         (456 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC60276 similar to UniRef100_A7QFK2 Cluster: Chromosome...   168   2e-41

>gnl|LJGI|TC60276 similar to UniRef100_A7QFK2 Cluster: Chromosome chr8 scaffold_88,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_88, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (79%)
          Length = 741

 Score =  168 bits (85), Expect = 2e-41
 Identities = 267/327 (81%), Gaps = 3/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 42  gttgcaacaactgcgagatgccacaaattccagtgctgtaaacaaagcatccattattgc 101
           |||||||||||| |||   | |||||||||||||||| | ||||| || || ||||||| 
Sbjct: 105 gttgcaacaacttcgatccgtcacaaattccagtgctatgaacaaggcctcaattattgt 164

                                                                       
Query: 102 ggacgcctccaaatacatagaggagttgaagcaaaaagtggaggatctgaactcagagct 161
           ||| ||  ||| |||||||||||||||||||||||||| |||||   ||| ||||||| |
Sbjct: 165 ggatgctaccagatacatagaggagttgaagcaaaaagaggagggattgagctcagagat 224

                                                                       
Query: 162 tggagttactgaatcatcaaccacacaaatcgatgaactacctatggtaagtgtaaaaac 221
           || ||   |||||||||||| | | |||   ||||||||||||| ||| | |||| ||||
Sbjct: 225 tgaagcagctgaatcatcaatctcccaa---gatgaactacctaaggtcactgtagaaac 281

                                                                       
Query: 222 cctagaaaagggtttcctcattcaagtgcttttagaaaagagttgtcctggcatgctagt 281
           |||||||||||||||||||||| | ||| ||| ||| | || ||| ||||| ||||| ||
Sbjct: 282 cctagaaaagggtttcctcattaatgtgttttcagagaggaattgccctgggatgcttgt 341

                                                                       
Query: 282 ctcaatacttgaagccttcgaagaactccaacttgatgtgattgatgctagggcttcttg 341
             ||||||| || ||||| ||||||||    ||||||||| | |||||||||| ||| ||
Sbjct: 342 ggcaatactggacgcctttgaagaactgggtcttgatgtgctcgatgctagggtttcctg 401

                                      
Query: 342 tgaagacactttccaactagaaactgt 368
           |||||||||||||||||| ||| ||||
Sbjct: 402 tgaagacactttccaactggaagctgt 428