Miyakogusa Predicted Gene

Lj1g3v2443940.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2443940.1 Non Chatacterized Hit- tr|I1HGW8|I1HGW8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,37.36,0.000000004,RCC1,Regulator of chromosome condensation, RCC1;
FYVE,Zinc finger, FYVE-type; RCC1_3,Regulator of ch,CUFF.29020.1
         (606 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome...    52   4e-06

>gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_25, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (37%)
          Length = 1246

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                       
Query: 190 tacacttggggaaaaggtgaaaatggaagattaggacatggagatatagaggatagaaaa 249
           ||||||||||| || |||| ||||||  | ||||| ||||||||||  || |||| ||| 
Sbjct: 260 tacacttggggtaagggtgcaaatggtcgtttaggccatggagatactgatgataaaaac 319

                                     
Query: 250 tctcctacattagtagaagccttgaa 275
           || || |||||||||||||| |||||
Sbjct: 320 tccccaacattagtagaagcattgaa 345