Miyakogusa Predicted Gene
- Lj1g3v2416610.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2416610.1 Non Chatacterized Hit- tr|C5X6F1|C5X6F1_SORBI
Putative uncharacterized protein Sb02g043850
OS=Sorghu,44.62,8e-19,DUF588,Uncharacterised protein family UPF0497,
trans-membrane plant; seg,NULL,CUFF.29002.1
(603 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AU251765 weakly similar to UniRef100_Q8LE26 Cluster: UP... 573 e-163
gnl|LJGI|BI419721 similar to UniRef100_A7QFG8 Cluster: Chromosom... 131 5e-30
gnl|LJGI|TC63224 weakly similar to UniRef100_A7QFG8 Cluster: Chr... 131 5e-30
gnl|LJGI|TC80766 similar to UniRef100_A7QFG8 Cluster: Chromosome... 98 8e-20
gnl|LJGI|BP064492 weakly similar to UniRef100_A7QFG8 Cluster: Ch... 92 5e-18
gnl|LJGI|TC64829 weakly similar to UniRef100_A7QFG8 Cluster: Chr... 66 3e-10
gnl|LJGI|TC59777 weakly similar to UniRef100_A7QFG8 Cluster: Chr... 66 3e-10
>gnl|LJGI|AU251765 weakly similar to UniRef100_Q8LE26 Cluster: UPF0497 membrane
protein At2g38480; n=1; Arabidopsis thaliana|Rep:
UPF0497 membrane protein At2g38480 - Arabidopsis
thaliana (Mouse-ear cress), partial (28%)
Length = 332
Score = 573 bits (289), Expect = e-163
Identities = 289/289 (100%)
Strand = Plus / Plus
Query: 1 atgtcgtcgactatggaggaggaggagaattcaacgccaaagatacatgtacagactccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 atgtcgtcgactatggaggaggaggagaattcaacgccaaagatacatgtacagactccg 103
Query: 61 ccaatggcccccgccggggaccgccaggctccggcggcttccaccggcggagttggtgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ccaatggcccccgccggggaccgccaggctccggcggcttccaccggcggagttggtgga 163
Query: 121 atcctgaggcggtggaggagggaggacttgttgaagagagggtcattgggtttgcgaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 atcctgaggcggtggaggagggaggacttgttgaagagagggtcattgggtttgcgaggg 223
Query: 181 atcgccctgcttttctctctgatctcgttcattgccatggctagcaaccagcacggtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atcgccctgcttttctctctgatctcgttcattgccatggctagcaaccagcacggtgat 283
Query: 241 tggagggaattcgacaaatatgaagagtacaggtatttgctggctattg 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tggagggaattcgacaaatatgaagagtacaggtatttgctggctattg 332
>gnl|LJGI|BI419721 similar to UniRef100_A7QFG8 Cluster: Chromosome chr8 scaffold_88,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_88, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 527
Score = 131 bits (66), Expect = 5e-30
Identities = 210/258 (81%)
Strand = Plus / Plus
Query: 268 tacaggtatttgctggctattgcgattttgtcctgtctgtacactggagctcaagtgttc 327
|||||||||||| |||| || || ||| |||| ||| | |||||||||| ||||||
Sbjct: 145 tacaggtatttgttggccatagctattctgtcttgtttttacactggaggccaagtgcat 204
Query: 328 cgtcaagttcatgaactttctacaggaaaacaactgattcagcccagaatggcagctatg 387
| | ||||||||||||||| || || | || || ||||||| ||||| |||| ||
Sbjct: 205 cttggagttcatgaactttccactgggaggaaaatgcttcagccaagaattgcagtgctg 264
Query: 388 attgattttattggagatcagatcattgcatatcttttgatatcgtcagcttcttcagca 447
|||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||
Sbjct: 265 tttgattttattggagatcagattatggcatatctcttgatatcatcagcgtcttcagcg 324
Query: 448 attccaataacaaatagaatgagggaaggagcagataatatattcacggactcttcagct 507
|||||||||||| ||| || || ||||||| ||| |||||||| || ||||| ||| ||
Sbjct: 325 attccaataacagataccataagagaaggaggagacaatatatttacagactcatcatct 384
Query: 508 tcagctattagcatgtcc 525
||||| ||||||||||||
Sbjct: 385 tcagccattagcatgtcc 402
>gnl|LJGI|TC63224 weakly similar to UniRef100_A7QFG8 Cluster: Chromosome chr8
scaffold_88, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_88, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (72%)
Length = 853
Score = 131 bits (66), Expect = 5e-30
Identities = 210/258 (81%)
Strand = Plus / Plus
Query: 268 tacaggtatttgctggctattgcgattttgtcctgtctgtacactggagctcaagtgttc 327
|||||||||||| |||| || || ||| |||| ||| | |||||||||| ||||||
Sbjct: 396 tacaggtatttgttggccatagctattctgtcttgtttttacactggaggccaagtgcat 455
Query: 328 cgtcaagttcatgaactttctacaggaaaacaactgattcagcccagaatggcagctatg 387
| | ||||||||||||||| || || | || || ||||||| ||||| |||| ||
Sbjct: 456 cttggagttcatgaactttccactgggaggaaaatgcttcagccaagaattgcagtgctg 515
Query: 388 attgattttattggagatcagatcattgcatatcttttgatatcgtcagcttcttcagca 447
|||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||
Sbjct: 516 tttgattttattggagatcagattatggcatatctcttgatatcatcagcgtcttcagcg 575
Query: 448 attccaataacaaatagaatgagggaaggagcagataatatattcacggactcttcagct 507
|||||||||||| ||| || || ||||||| ||| |||||||| || ||||| ||| ||
Sbjct: 576 attccaataacagataccataagagaaggaggagacaatatatttacagactcatcatct 635
Query: 508 tcagctattagcatgtcc 525
||||| ||||||||||||
Sbjct: 636 tcagccattagcatgtcc 653
>gnl|LJGI|TC80766 similar to UniRef100_A7QFG8 Cluster: Chromosome chr8 scaffold_88,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_88, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 530
Score = 97.6 bits (49), Expect = 8e-20
Identities = 103/121 (85%)
Strand = Plus / Plus
Query: 405 tcagatcattgcatatcttttgatatcgtcagcttcttcagcaattccaataacaaatag 464
|||||| || |||||||| |||||||| ||||| |||||||| |||||||||||| |||
Sbjct: 136 tcagattatggcatatctcttgatatcatcagcgtcttcagcgattccaataacagatac 195
Query: 465 aatgagggaaggagcagataatatattcacggactcttcagcttcagctattagcatgtc 524
|| || ||||||| ||| |||||||| || ||||| ||| ||||||| |||||||||||
Sbjct: 196 cataagagaaggaggagacaatatatttacagactcatcatcttcagccattagcatgtc 255
Query: 525 c 525
|
Sbjct: 256 c 256
>gnl|LJGI|BP064492 weakly similar to UniRef100_A7QFG8 Cluster: Chromosome chr8
scaffold_88, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_88, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (23%)
Length = 482
Score = 91.7 bits (46), Expect = 5e-18
Identities = 130/158 (82%)
Strand = Plus / Minus
Query: 365 ttcagcccagaatggcagctatgattgattttattggagatcagatcattgcatatcttt 424
||||||||||||| || | || |||||||||||||||||||||| || |||||||| |
Sbjct: 463 ttcagcccagaattgccgtgctgtttgattttattggagatcagattatggcatatctct 404
Query: 425 tgatatcgtcagcttcttcagcaattccaataacaaatagaatgagggaaggagcagata 484
||||||| ||||| |||||||| ||||| ||||| ||| || || ||||||| |||
Sbjct: 403 tgatatcatcagcgtcttcagcgattcccataaccgataccataagagaaggaggagacc 344
Query: 485 atatattcacggactcttcagcttcagctattagcatg 522
||||||| || ||||| ||| ||||||| ||||||||
Sbjct: 343 atatattgacagactcatcatcttcagcccttagcatg 306
>gnl|LJGI|TC64829 weakly similar to UniRef100_A7QFG8 Cluster: Chromosome chr8
scaffold_88, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_88, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (71%)
Length = 761
Score = 65.9 bits (33), Expect = 3e-10
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 484 aatatattcacggactcttcagcttcagctattagcatgtccattttcgccttcttgtgt 543
||||||||||| || |||| |||| |||| |||||||||||| |||| ||||| ||||||
Sbjct: 555 aatatattcacagattctttagctgcagccattagcatgtccttttttgcctttttgtgt 614
Query: 544 cttgcattgtcagctctcatttctggctacaaactatcaac 584
|| ||| | ||||| || || || || || |||||||||||
Sbjct: 615 ctagcactatcagcccttatatcaggatataaactatcaac 655
>gnl|LJGI|TC59777 weakly similar to UniRef100_A7QFG8 Cluster: Chromosome chr8
scaffold_88, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_88, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (71%)
Length = 781
Score = 65.9 bits (33), Expect = 3e-10
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 484 aatatattcacggactcttcagcttcagctattagcatgtccattttcgccttcttgtgt 543
||||||||||| || |||| |||| |||| |||||||||||| |||| ||||| ||||||
Sbjct: 513 aatatattcacagattctttagctgcagccattagcatgtccttttttgcctttttgtgt 572
Query: 544 cttgcattgtcagctctcatttctggctacaaactatcaac 584
|| ||| | ||||| || || || || || |||||||||||
Sbjct: 573 ctagcactatcagcccttatatcaggatataaactatcaac 613