Miyakogusa Predicted Gene

Lj1g3v2405410.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2405410.1 Non Chatacterized Hit- tr|K4CRX8|K4CRX8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,42.61,7e-18,
,CUFF.28991.1
         (318 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69137 weakly similar to UniRef100_A7QFG7 Cluster: Chr...   478   e-134
gnl|LJGI|TC80486 weakly similar to UniRef100_P35299 Cluster: Pro...   111   3e-24

>gnl|LJGI|TC69137 weakly similar to UniRef100_A7QFG7 Cluster: Chromosome chr8
           scaffold_88, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr8 scaffold_88, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (11%)
          Length = 567

 Score =  478 bits (241), Expect = e-134
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaacgtaccgcaggcaagttcggctctctccggaatcttctaatacggtttctcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atggaacgtaccgcaggcaagttcggctctctccggaatcttctaatacggtttctcatc 386

                                                                       
Query: 61  tccggcgtcttcatcatcgccgtccgtttcgcttacgtcatctccatcgccggcgagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccggcgtcttcatcatcgccgtccgtttcgcttacgtcatctccatcgccggcgagtcc 446

                                                                       
Query: 121 tgcaacgtcgccgatttctgcttcttctccctgccggagtctctcagccacgtcatcgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgcaacgtcgccgatttctgcttcttctccctgccggagtctctcagccacgtcatcgcc 506

                                                                       
Query: 181 ggcaccggccccctcgccgtcgagtctgcttccggtggcagtggtttgtcgccggcggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggcaccggccccctcgccgtcgagtctgcttccggtggcagtggtttgtcgccggcggag 566

            
Query: 241 c 241
           |
Sbjct: 567 c 567


>gnl|LJGI|TC80486 weakly similar to UniRef100_P35299 Cluster: Protamine-2; n=1; Pan
           paniscus|Rep: Protamine-2 - Pan paniscus (Pygmy
           chimpanzee) (Bonobo), partial (25%)
          Length = 517

 Score =  111 bits (56), Expect = 3e-24
 Identities = 92/104 (88%)
 Strand = Plus / Plus

                                                                       
Query: 63  cggcgtcttcatcatcgccgtccgtttcgcttacgtcatctccatcgccggcgagtcctg 122
           |||||| |||||| ||  ||| || ||||||||||||||| |||||||||||||||||||
Sbjct: 375 cggcgttttcatcgtcctcgttcgcttcgcttacgtcatcaccatcgccggcgagtcctg 434

                                                       
Query: 123 caacgtcgccgatttctgcttcttctccctgccggagtctctca 166
           |||| ||| ||| |||||||||||||||  ||||||||||||||
Sbjct: 435 caacctcggcgacttctgcttcttctccgcgccggagtctctca 478