Miyakogusa Predicted Gene
- Lj1g3v2337910.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2337910.1 tr|B6CI32|B6CI32_VIGUN Chloroplast omega-3 fatty
acid desaturase OS=Vigna unguiculata GN=FAD8 PE=2
S,79.74,0,DUF3474,Protein of unknown function DUF3474;
FA_desaturase,Fatty acid desaturase, type 1; SUBFAMILY ,CUFF.28926.1
(1323 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60877 similar to UniRef100_Q8LK94 Cluster: Chloroplas... 821 0.0
gnl|LJGI|TC78664 UniRef100_UPI0000ECB9CD Cluster: Probable RNA-b... 337 1e-91
gnl|LJGI|TC74827 similar to UniRef100_Q9FXK9 Cluster: Microsomal... 143 3e-33
gnl|LJGI|TC58118 similar to UniRef100_Q9FXK9 Cluster: Microsomal... 141 1e-32
gnl|LJGI|BP033409 similar to UniRef100_Q84X83 Cluster: Microsoma... 58 1e-07
>gnl|LJGI|TC60877 similar to UniRef100_Q8LK94 Cluster: Chloroplast omega-3 desaturase;
n=1; Prunus persica|Rep: Chloroplast omega-3 desaturase -
Prunus persica (Peach), partial (30%)
Length = 746
Score = 821 bits (414), Expect = 0.0
Identities = 414/414 (100%)
Strand = Plus / Plus
Query: 910 ccctatgtgctgtttgttatgtggttggatttggtgacttacttgcatcatcatggccat 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccctatgtgctgtttgttatgtggttggatttggtgacttacttgcatcatcatggccat 60
Query: 970 gaagacaaattaccatggtatcgtggaaaggaatggagctaccttaggggtgggcttaca 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagacaaattaccatggtatcgtggaaaggaatggagctaccttaggggtgggcttaca 120
Query: 1030 actattgatcgtgactatggattgattaacaacatccaccatgacattggaacccatgtc 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actattgatcgtgactatggattgattaacaacatccaccatgacattggaacccatgtc 180
Query: 1090 atccatcatctctttcctcaaatcccacactataacttaatagaagcgactgaggcagct 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atccatcatctctttcctcaaatcccacactataacttaatagaagcgactgaggcagct 240
Query: 1150 aagccagttcttggcaaatattaccgggagccaaagaaatcaagtcctattccattccac 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagccagttcttggcaaatattaccgggagccaaagaaatcaagtcctattccattccac 300
Query: 1210 ctcattggagatttgctaagaagcctgaagaaagaccattttgtcagcgacactggggat 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcattggagatttgctaagaagcctgaagaaagaccattttgtcagcgacactggggat 360
Query: 1270 gttgtgtactaccaaacagaccctaagcttgctgggtcttccacatcaaagtaa 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttgtgtactaccaaacagaccctaagcttgctgggtcttccacatcaaagtaa 414
>gnl|LJGI|TC78664 UniRef100_UPI0000ECB9CD Cluster: Probable RNA-binding protein 25
(RNA-binding motif protein 25) (RNA- binding
region-containing protein 7) (Protein S164).; n=1;
Gallus gallus|Rep: Probable RNA-binding protein 25
(RNA-binding motif protein 25) (RNA- binding
region-containing protein 7) (Protein S164). - Gallus
gallus, partial (4%)
Length = 592
Score = 337 bits (170), Expect = 1e-91
Identities = 182/186 (97%)
Strand = Plus / Plus
Query: 1 atggcggccacatgggttttatcagaatgtggcttgaggccacttcctccaacttttcca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atggcggcaacatgggttttatcagaatgtggcttgaggccacttcctccaacttttcca 466
Query: 61 cgacccagaacaggagccatagtttcaagccaaaaaccttcaagcttgagatttttgagc 120
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cgacccaaaacaagagccatattttcaagccaaaaaccttcaagcttgagatttttgagc 526
Query: 121 acaaacaagggtaacccagatctgggttttcaaccaagaggggccataacatgttgtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acaaacaagggtaacccagatctgggttttcaaccaagaggggccataacatgttgtggc 586
Query: 181 ggtttt 186
||||||
Sbjct: 587 ggtttt 592
>gnl|LJGI|TC74827 similar to UniRef100_Q9FXK9 Cluster: Microsomal omega-3 fatty acid
desaturase; n=3; Glycine max|Rep: Microsomal omega-3
fatty acid desaturase - Glycine max (Soybean), partial
(40%)
Length = 622
Score = 143 bits (72), Expect = 3e-33
Identities = 213/260 (81%)
Strand = Plus / Plus
Query: 931 tggttggatttggtgacttacttgcatcatcatggccatgaagacaaattaccatggtat 990
|||||||| || ||||| ||||||||||| ||||| | || | || |||| |||||
Sbjct: 80 tggttggacttcgtgacatacttgcatcaccatggttacgagcagaagctaccttggtac 139
Query: 991 cgtggaaaggaatggagctaccttaggggtgggcttacaactattgatcgtgactatgga 1050
||||| ||||||||| || ||||||||||| |||||||| ||||||||||||||||
Sbjct: 140 cgtggcaaggaatgggattatcttaggggtggtcttacaaccgttgatcgtgactatggt 199
Query: 1051 ttgattaacaacatccaccatgacattggaacccatgtcatccatcatctctttcctcaa 1110
| | |||||||||| |||||||||||||| || ||||| || |||||||| || ||||||
Sbjct: 200 tgggttaacaacattcaccatgacattggcacacatgttattcatcatcttttccctcaa 259
Query: 1111 atcccacactataacttaatagaagcgactgaggcagctaagccagttcttggcaaatat 1170
|| || |||||| | || |||||||||| | ||||| |||||||| ||||| || |||
Sbjct: 260 attcctcactatcatttggtagaagcgacacaagcagcaaagccagtgcttggaaagtat 319
Query: 1171 taccgggagccaaagaaatc 1190
||||| |||||| |||||||
Sbjct: 320 taccgagagccagagaaatc 339
>gnl|LJGI|TC58118 similar to UniRef100_Q9FXK9 Cluster: Microsomal omega-3 fatty acid
desaturase; n=3; Glycine max|Rep: Microsomal omega-3
fatty acid desaturase - Glycine max (Soybean), partial
(90%)
Length = 1165
Score = 141 bits (71), Expect = 1e-32
Identities = 176/211 (83%)
Strand = Plus / Plus
Query: 980 taccatggtatcgtggaaaggaatggagctaccttaggggtgggcttacaactattgatc 1039
|||| ||||| ||||| ||||||||| || ||||||||||| |||||||| ||||||
Sbjct: 905 taccttggtaccgtggcaaggaatgggattatcttaggggtggtcttacaaccgttgatc 964
Query: 1040 gtgactatggattgattaacaacatccaccatgacattggaacccatgtcatccatcatc 1099
|||||||||| | | |||||||||| |||||||||||||| || ||||| || |||||||
Sbjct: 965 gtgactatggttgggttaacaacattcaccatgacattggcacacatgttattcatcatc 1024
Query: 1100 tctttcctcaaatcccacactataacttaatagaagcgactgaggcagctaagccagttc 1159
| || |||||||| || |||||| | || |||||||||| | ||||| |||||||| |
Sbjct: 1025 ttttccctcaaattcctcactatcatttggtagaagcgacacaagcagcaaagccagtgc 1084
Query: 1160 ttggcaaatattaccgggagccaaagaaatc 1190
|||| || |||||||| |||||| |||||||
Sbjct: 1085 ttggaaagtattaccgagagccagagaaatc 1115
Score = 95.6 bits (48), Expect = 7e-19
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 454 tggcctctctattgggctgctcaaggaaccatgttctgggctctctttgttcttggtcat 513
||||| ||||| ||||||||||| || || ||||||||||| || ||||||||||| |||
Sbjct: 343 tggccactctactgggctgctcagggcacaatgttctgggcactttttgttcttggacat 402
Query: 514 gattgtggtcatggaagcttttca 537
|||||||| |||||||||||||||
Sbjct: 403 gattgtggccatggaagcttttca 426
>gnl|LJGI|BP033409 similar to UniRef100_Q84X83 Cluster: Microsomal omega-3-fatty acid
desaturase; n=2; Glycine max|Rep: Microsomal
omega-3-fatty acid desaturase - Glycine max (Soybean),
partial (24%)
Length = 480
Score = 58.0 bits (29), Expect = 1e-07
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1036 gatcgtgactatggattgattaacaacatccaccatgacattggaacccatgtcatccat 1095
|||||||||||||| | | |||| ||||| |||||||||||||| || ||||| || |||
Sbjct: 479 gatcgtgactatggttgggttaataacattcaccatgacattggcacacatgttattcat 420
Query: 1096 catctctttcctcaaat 1112
|| || || ||||||||
Sbjct: 419 caccttttccctcaaat 403