Miyakogusa Predicted Gene
- Lj1g3v2327870.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2327870.1 tr|G7JX91|G7JX91_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_5g057710 PE=4
SV=1,43.56,0.00000000004,F_box_assoc_1: F-box protein interaction
domain,F-box associated interaction domain,gene.g32987.t1.1
(693 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease ... 1289 0.0
gnl|LJGI|TC82429 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 72 5e-12
gnl|LJGI|TC68257 68 8e-11
gnl|LJGI|AV765936 weakly similar to UniRef100_Q2HWB4 Cluster: Cy... 66 3e-10
gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 66 3e-10
gnl|LJGI|TC77565 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 66 3e-10
gnl|LJGI|BP079620 similar to UniRef100_A7Q9Q0 Cluster: Chromosom... 64 1e-09
>gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease of the
drug/metabolite transporter (DMT) superfamily; n=1;
Synechococcus sp. WH 7803|Rep: Permease of the
drug/metabolite transporter (DMT) superfamily -
Synechococcus sp. (strain WH7803), partial (7%)
Length = 738
Score = 1289 bits (650), Expect = 0.0
Identities = 673/678 (99%), Gaps = 2/678 (0%)
Strand = Plus / Plus
Query: 16 gatttagacgagaaattgcggtctttggaaaatccacggcgagaaggtagttacacaatt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gatttagacgagaaattgcggtctttggaaaatccacggcgagaaggtagttacacaatt 66
Query: 76 tatgggtttggctatgatcatttcagtgatagttataaagttgttgcagttttctgctat 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tatgggtttggctatgatcatttcagtgatagttataaagttgttgcagttttctgctat 126
Query: 136 gaatgtgatagtggtagtgggggttacaaaacacaagtgaaggtttacactttgggttca 195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 127 gaatgtgatagtggtagtgggggttacaaaacacaagtgaaggtttacactttgggttta 186
Query: 196 gattcttggaggcaaattcaagattttccttcaggtgtcccttttgatgaaacaggaaga 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gattcttggaggcaaattcaagattttccttcaggtgtcccttttgatgaaacaggaaga 246
Query: 256 tttgtgagtggcagtcttaattggttggcgtctgttgattcgagttgggttattgtttct 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttgtgagtggcagtcttaattggttggcgtctgttgattcgagttgggttattgtttct 306
Query: 316 cttgatttggggaaggaatgttatcaagaactttcgctacccgattgcggtgatgcagct 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttgatttggggaaggaatgttatcaagaactttcgctacccgattgcggtgatgcagct 366
Query: 376 ttgactttgggggtgttgagggattgtttgtgcattgttactcaccattatgagttttct 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttgactttgggggtgttgagggattgtttgtgcattgttactcaccattatgagttttct 426
Query: 436 gatgtttggcttatgaaggagtatggaaataaagagtcctggaccaaaattttcagtgtt 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gatgtttggcttatgaaggagtatggaaataaagagtcctggaccaaaattttcagtgtt 486
Query: 496 cctagcatgggggaacaatccccgtataccaagacgcttcatatttcagaggatgacgaa 555
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 487 cctagcatgggggaacaatccccgcataccaagacgcttcatatttcagaggatgacgaa 546
Query: 556 gtgctgctggagttccaatcacagctagttgtttacaatttcagagattgcacttttaaa 615
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 547 gtgctgctggagttccaatcacagctagttgtttacaatttcagggattgcacttttaaa 606
Query: 616 actccccaaattcaaaacatcactagttggatggtccctgacgtgtatgttgaaagtttg 675
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 607 actccccaaattc-aaacatcactagttggatggtccctgacgtgtatgttg-aagtttg 664
Query: 676 atatcaccttgttcttga 693
||||||||||||||||||
Sbjct: 665 atatcaccttgttcttga 682
>gnl|LJGI|TC82429 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (5%)
Length = 542
Score = 71.9 bits (36), Expect = 5e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 435 tgatgtttggcttatgaaggagtatggaaataaagagtcctggaccaaaattttcagtgt 494
||||||||||||||||||||||||||||||| || |||| ||||| ||| | ||||||||
Sbjct: 48 tgatgtttggcttatgaaggagtatggaaatcaacagtcttggactaaattattcagtgt 107
Score = 63.9 bits (32), Expect = 1e-09
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 606 cacttttaaaactccccaaattcaaaacatcactagttggatggtccctgacgtgtatgt 665
|||||| ||||||| |||||||| || || ||| ||||| ||||||| | || |||||
Sbjct: 219 cactttgaaaactcatcaaattcagaatattactggttgggtggtcccaggggtctatgt 278
Query: 666 tgaaagtttgatatcacctt 685
||||||||||||||||||||
Sbjct: 279 tgaaagtttgatatcacctt 298
>gnl|LJGI|TC68257
Length = 601
Score = 67.9 bits (34), Expect = 8e-11
Identities = 87/105 (82%), Gaps = 6/105 (5%)
Strand = Plus / Minus
Query: 242 atgaaacaggaagatttgtgagtggcagtcttaattggttggcgtctgttgattcgagtt 301
||||| |||||| |||||||||||| | ||||||||||||| ||| | ||||| |
Sbjct: 549 atgaatcaggaaaatttgtgagtggtactcttaattggttgttgtcagatgatttg---- 494
Query: 302 gggttattgtttctcttgatttggggaaggaatgttatcaagaac 346
|||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct: 493 --gttattgtttcttttgatttggggaatgaaagttatcaagaac 451
Score = 65.9 bits (33), Expect = 3e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 435 tgatgtttggcttatgaaggagtatggaaataaagagtcctggac 479
|||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 363 tgatatttggcttatgaaggagtatggaaataaagattcatggac 319
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 661 tatgttgaaagtttgatatcaccttgttctt 691
||||| |||||||||||||||||||||||||
Sbjct: 134 tatgtagaaagtttgatatcaccttgttctt 104
>gnl|LJGI|AV765936 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (5%)
Length = 447
Score = 65.9 bits (33), Expect = 3e-10
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 435 tgatgtttggcttatgaaggagtatggaaataaagagtcctggac 479
|||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct: 414 tgatatttggcttatgaaggagtatggaagtaaagagtcttggac 370
>gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 1418
Score = 65.9 bits (33), Expect = 3e-10
Identities = 119/147 (80%), Gaps = 3/147 (2%)
Strand = Plus / Plus
Query: 26 agaaattgcggtctttggaaaatccacggcgagaaggtagttacacaatttatgggtttg 85
|||||| || |||| ||||||||||||| | | ||| ||||| ||||| || || || |
Sbjct: 572 agaaatcgccgtctctggaaaatccacgcctaaaagatagtttcacaaaatacggtttcg 631
Query: 86 gctatgatcatttcagtgatagttataaagttgttgcagttttctgctatgaatgtgata 145
| ||||||||||| ||| ||||| ||||| ||||||||||||||||||||| |||
Sbjct: 632 gttatgatcattttgctgacagttacaaagtagttgcagttttctgctatgaa---gatg 688
Query: 146 gtggtagtgggggttacaaaacacaag 172
||| |||||| ||||||||||||||
Sbjct: 689 gtgatagtggtctttacaaaacacaag 715
Score = 58.0 bits (29), Expect = 8e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 435 tgatgtttggcttatgaaggagtatggaaataaagagtcctggac 479
|||| ||||| |||||||||||||||||| ||||||||| |||||
Sbjct: 1035 tgatatttggtttatgaaggagtatggaagtaaagagtcttggac 1079
>gnl|LJGI|TC77565 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (19%)
Length = 803
Score = 65.9 bits (33), Expect = 3e-10
Identities = 102/125 (81%)
Strand = Plus / Plus
Query: 159 ttacaaaacacaagtgaaggtttacactttgggttcagattcttggaggcaaattcaaga 218
||||| ||||||||| ||||| | ||||| ||| | || |||||||| | ||||||||
Sbjct: 671 ttacagaacacaagtccaggttcatactttaggtactcatgcttggagggagattcaaga 730
Query: 219 ttttccttcaggtgtcccttttgatgaaacaggaagatttgtgagtggcagtcttaattg 278
|| |||||| |||||||||| || |||||||| |||| ||| ||||| |||||||||
Sbjct: 731 cttcccttcatgtgtccctttcactggaacaggaaaatttctgaatggcactcttaattg 790
Query: 279 gttgg 283
|||||
Sbjct: 791 gttgg 795
>gnl|LJGI|BP079620 similar to UniRef100_A7Q9Q0 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 355
Score = 63.9 bits (32), Expect = 1e-09
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 436 gatgtttggcttatgaaggagtatggaaataaagagtcctggac 479
||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct: 351 gatgtttgggttatgaaggagtatggaaataatgagtcatggac 308