Miyakogusa Predicted Gene
- Lj1g3v2292800.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2292800.1 Non Chatacterized Hit- tr|C5Y452|C5Y452_SORBI
Putative uncharacterized protein Sb05g002330
OS=Sorghu,24.38,6e-19,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; FAMILY NOT NAMED,NULL;
PPR_2,Pentatri,CUFF.29130.1
(828 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82519 similar to UniRef100_A7QPB3 Cluster: Chromosome... 1633 0.0
gnl|LJGI|TC72438 similar to UniRef100_A7QPB3 Cluster: Chromosome... 210 1e-53
>gnl|LJGI|TC82519 similar to UniRef100_A7QPB3 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 1200
Score = 1633 bits (824), Expect = 0.0
Identities = 827/828 (99%)
Strand = Plus / Plus
Query: 1 atgaagagtaatggggtgcagcctgataggcatttttacaatgtgatgattgatactttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 atgaagagtaatggggtgcagcctgataggcatttttacaatgtgatgattgatactttt 107
Query: 61 gggaagttcaattgtcttgatcatgctatggcaacgttcgagcgaatgttgtcggaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gggaagttcaattgtcttgatcatgctatggcaacgttcgagcgaatgttgtcggaggag 167
Query: 121 attcgacccgatacggttacttggaacacgctgatagattgtcattgtaaggccgggtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 attcgacccgatacggttacttggaacacgctgatagattgtcattgtaaggccgggtac 227
Query: 181 catgatagagcagaggagttgtttcaggaaatgcagcagaagggatactccccttgtgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 catgatagagcagaggagttgtttcaggaaatgcagcagaagggatactccccttgtgtc 287
Query: 241 ttgacttataatatcatgatcaattctatgggggcacaggaaaagtgggaccaagtgagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgacttataatatcatgatcaattctatgggggcacaggaaaagtgggaccaagtgagt 347
Query: 301 gatttgttaactaggatgcagagtcagggattgctgccgaatgcggtaacgtttacaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gatttgttaactaggatgcagagtcagggattgctgccgaatgcggtaacgtttacaacc 407
Query: 361 cttgttgatgtgtatggaaagtcaggaaggtttaatgacgcgttagagtgcttggaggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cttgttgatgtgtatggaaagtcaggaaggtttaatgacgcgttagagtgcttggaggtc 467
Query: 421 ttgaaatctatgggattcaagccaactccaaccatgtataatgccctgatcaatgcatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgaaatctatgggattcaagccaactccaaccatgtataatgccctgatcaatgcatac 527
Query: 481 gcgcaaaggggtctgtctgatcaagcagtaaacgctttcaggaagatgacagctgagggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcgcaaaggggtctgtctgatcaagcagtaaacgctttcaggaagatgacagctgagggt 587
Query: 541 ctaaaacccagtcttttagctctcaattcattgatcaatgcttttggtgaagatagaagg 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctaacacccagtcttttagctctcaattcattgatcaatgcttttggtgaagatagaagg 647
Query: 601 gatcctgaggcctttgctgtgctgcagtacatgaaagaaaatgacttgcaacctgatgta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gatcctgaggcctttgctgtgctgcagtacatgaaagaaaatgacttgcaacctgatgta 707
Query: 661 gttacctatactacacttatgaaagccttgattcgtgttgacaagttccacaaggtcccc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gttacctatactacacttatgaaagccttgattcgtgttgacaagttccacaaggtcccc 767
Query: 721 gctgtgtatgaagaaatggtttcgtctggatgcactccagatagaaaggctagagcaatg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gctgtgtatgaagaaatggtttcgtctggatgcactccagatagaaaggctagagcaatg 827
Query: 781 ctgcggtctgctcttagatacatgagacagacacttaaatcataaatt 828
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ctgcggtctgctcttagatacatgagacagacacttaaatcataaatt 875
>gnl|LJGI|TC72438 similar to UniRef100_A7QPB3 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 501
Score = 210 bits (106), Expect = 1e-53
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 723 tgtgtatgaagaaatggtttcgtctggatgcactccagatagaaaggctagagcaatgct 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgtgtatgaagaaatggtttcgtctggatgcactccagatagaaaggctagagcaatgct 66
Query: 783 gcggtctgctcttagatacatgagacagacacttaaatcataaatt 828
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gcggtctgctcttagatacatgagacagacacttaaatcataaatt 112