Miyakogusa Predicted Gene

Lj1g3v2251620.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2251620.1 CUFF.28746.1
         (1531 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV415701 similar to UniRef100_A7NVN5 Cluster: Chromosom...   357   1e-97
gnl|LJGI|TC66852 similar to UniRef100_Q9XGG7 Cluster: Nodulin26-...   117   2e-25
gnl|LJGI|AV770214                                                      54   3e-06

>gnl|LJGI|AV415701 similar to UniRef100_A7NVN5 Cluster: Chromosome chr18 scaffold_1,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr18 scaffold_1, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (11%)
          Length = 418

 Score =  357 bits (180), Expect = 1e-97
 Identities = 180/180 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1320 ccgcattttgattttgatgttctgtgaaaaggggcactggaacaatgcctacaagttgat 1379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183  ccgcattttgattttgatgttctgtgaaaaggggcactggaacaatgcctacaagttgat 124

                                                                        
Query: 1380 gaaggagatggttgaagaaaaaagcctaaaaccaaatctgcaagtttatgaaaatgttct 1439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123  gaaggagatggttgaagaaaaaagcctaaaaccaaatctgcaagtttatgaaaatgttct 64

                                                                        
Query: 1440 agagctgctgaggaaggctggacagcttaaaatgcatgaagagttggtggagaagatggt 1499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63   agagctgctgaggaaggctggacagcttaaaatgcatgaagagttggtggagaagatggt 4


>gnl|LJGI|TC66852 similar to UniRef100_Q9XGG7 Cluster: Nodulin26-like major intrinsic
            protein; n=1; Pisum sativum|Rep: Nodulin26-like major
            intrinsic protein - Pisum sativum (Garden pea), partial
            (29%)
          Length = 1009

 Score =  117 bits (59), Expect = 2e-25
 Identities = 90/99 (90%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1380 gaaggagatggttgaagaaaaaagcctaaaaccaaatctgcaagtttatgaaaatgttct 1439
            ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||  |||||
Sbjct: 2    gaaggggatggttgaagaaaaatgcctaaa-ccaaatctgcaagtttatgaaatggttct 60

                                                   
Query: 1440 agagctgctgaggaaggctggacagcttaaaatgcatga 1478
            | |||||||||||||||||||| || | |||||||||||
Sbjct: 61   acagctgctgaggaaggctggatagttaaaaatgcatga 99


>gnl|LJGI|AV770214 
          Length = 514

 Score = 54.0 bits (27), Expect = 3e-06
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 1331 ttttgatgttctgtgaaaaggggcactggaacaatgcctacaagttgatga 1381
            ||||||||||||||| |||||| || ||| ||| |||||||| ||||||||
Sbjct: 327  ttttgatgttctgtgtaaagggacattggcacagtgcctacacgttgatga 277