Miyakogusa Predicted Gene
- Lj1g3v2251580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2251580.1 Non Chatacterized Hit- tr|I1JSZ4|I1JSZ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1351 PE=,76.24,0,S4
RNA-binding domain,RNA-binding S4 domain; no description,RNA-binding
S4 domain; S4,RNA-binding S4,CUFF.28745.1
(888 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO008096 similar to UniRef100_Q9LQR4 Cluster: T4O12.25;... 1265 0.0
gnl|LJGI|FS327442 similar to UniRef100_Q9LQR4 Cluster: T4O12.25;... 759 0.0
gnl|LJGI|TC69856 similar to UniRef100_A7NVN2 Cluster: Chromosome... 161 9e-39
>gnl|LJGI|GO008096 similar to UniRef100_Q9LQR4 Cluster: T4O12.25; n=1; Arabidopsis
thaliana|Rep: T4O12.25 - Arabidopsis thaliana (Mouse-ear
cress), partial (11%)
Length = 707
Score = 1265 bits (638), Expect = 0.0
Identities = 658/662 (99%), Gaps = 2/662 (0%)
Strand = Plus / Plus
Query: 1 atgatactacttcactccagtggctattgccgcgtttccacgccaagagcattcaaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 atgatactacttcactccagtggctattgccgcgtttccacgccaagagcattcaaattc 104
Query: 61 caaacaccactttctccttcactccttttctctgcaaccaactccaaatctcgttccgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 caaacaccactttctccttcactccttttctctgcaaccaactccaaatctcgttccgcc 164
Query: 121 attgcaagagctagttctggtttcgccgataactccgactccggtgacggcggagagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 attgcaagagctagttctggtttcgccgataactccgactccggtgacggcggagagcca 224
Query: 181 agggcgaattacgccggcgtgcagttggaggagatcgtcgataacagaatcggatctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 agggcgaattacgccggcgtgcagttggaggagatcgtcgataacagaatcggatctgga 284
Query: 241 aaacctagactcgatagttggatctctactcgcatcaatggaatcagtagagctcgcgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaacctagactcgatagttggatctctactcgcatcaatggaatcagtagagctcgcgtg 344
Query: 301 caatcaagtatcaaatctggactcgttcatgtcaatggccgcgttgttaataaggtttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 caatcaagtatcaaatctggactcgttcatgtcaatggccgcgttgttaataaggtttct 404
Query: 361 ttcaatgtcaaatctggtgatgagatcaagtgtacaattgctgagttgcagagtttgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttcaatgtcaaatctggtgatgagatcaagtgtacaattgctgagttgcagagtttgagg 464
Query: 421 gctgtgccagaagatatacctttggatatagtttatgaagatgagcatttgctagtcata 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 465 gctgtgccagaagatatacctttggatatagtttatgaagatgagcatctgctagtcata 524
Query: 481 aataaaccggcacacatggttgtgcatccagcacctggcaatacatctgggacgcttgta 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 aataaaccggcacacatggttgtgcatccagcacctggcaatacatttgggacgcttgta 584
Query: 541 aatggcattcttcaccattgcaaccttccaaatgctgaattttctaacgaggacgctctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aatggcattcttcaccattgcaaccttccaaatgctgaattttctaacgaggacgctctt 644
Query: 601 gcatatacagaagattctgatgatgaattgaatagcttcttccaggcaagttcttgtgaa 660
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 645 gcatatacagaagattctgatgatg-attgaatagcttcttcca-gcaagttcttgtgaa 702
Query: 661 gg 662
||
Sbjct: 703 gg 704
>gnl|LJGI|FS327442 similar to UniRef100_Q9LQR4 Cluster: T4O12.25; n=1; Arabidopsis
thaliana|Rep: T4O12.25 - Arabidopsis thaliana (Mouse-ear
cress), partial (14%)
Length = 773
Score = 759 bits (383), Expect = 0.0
Identities = 383/383 (100%)
Strand = Plus / Plus
Query: 353 aggtttctttcaatgtcaaatctggtgatgagatcaagtgtacaattgctgagttgcaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aggtttctttcaatgtcaaatctggtgatgagatcaagtgtacaattgctgagttgcaga 450
Query: 413 gtttgagggctgtgccagaagatatacctttggatatagtttatgaagatgagcatttgc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtttgagggctgtgccagaagatatacctttggatatagtttatgaagatgagcatttgc 510
Query: 473 tagtcataaataaaccggcacacatggttgtgcatccagcacctggcaatacatctggga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tagtcataaataaaccggcacacatggttgtgcatccagcacctggcaatacatctggga 570
Query: 533 cgcttgtaaatggcattcttcaccattgcaaccttccaaatgctgaattttctaacgagg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cgcttgtaaatggcattcttcaccattgcaaccttccaaatgctgaattttctaacgagg 630
Query: 593 acgctcttgcatatacagaagattctgatgatgaattgaatagcttcttccaggcaagtt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acgctcttgcatatacagaagattctgatgatgaattgaatagcttcttccaggcaagtt 690
Query: 653 cttgtgaagggtctgcggcatcaattcgccctggaatcgtacacagattggacaaaggca 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cttgtgaagggtctgcggcatcaattcgccctggaatcgtacacagattggacaaaggca 750
Query: 713 caagtggattacttgttgttgcg 735
|||||||||||||||||||||||
Sbjct: 751 caagtggattacttgttgttgcg 773
Score = 694 bits (350), Expect = 0.0
Identities = 350/350 (100%)
Strand = Plus / Plus
Query: 5 tactacttcactccagtggctattgccgcgtttccacgccaagagcattcaaattccaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tactacttcactccagtggctattgccgcgtttccacgccaagagcattcaaattccaaa 63
Query: 65 caccactttctccttcactccttttctctgcaaccaactccaaatctcgttccgccattg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 caccactttctccttcactccttttctctgcaaccaactccaaatctcgttccgccattg 123
Query: 125 caagagctagttctggtttcgccgataactccgactccggtgacggcggagagccaaggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caagagctagttctggtttcgccgataactccgactccggtgacggcggagagccaaggg 183
Query: 185 cgaattacgccggcgtgcagttggaggagatcgtcgataacagaatcggatctggaaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cgaattacgccggcgtgcagttggaggagatcgtcgataacagaatcggatctggaaaac 243
Query: 245 ctagactcgatagttggatctctactcgcatcaatggaatcagtagagctcgcgtgcaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctagactcgatagttggatctctactcgcatcaatggaatcagtagagctcgcgtgcaat 303
Query: 305 caagtatcaaatctggactcgttcatgtcaatggccgcgttgttaataag 354
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caagtatcaaatctggactcgttcatgtcaatggccgcgttgttaataag 353
>gnl|LJGI|TC69856 similar to UniRef100_A7NVN2 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 856
Score = 161 bits (81), Expect = 9e-39
Identities = 105/109 (96%), Gaps = 3/109 (2%)
Strand = Plus / Plus
Query: 772 ttcaagctacgtactatcaagagggtctatgttagtcttactattggggtacctactcca 831
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttcaagctacgtactctcaagagg-tctatgttagtcttactattggggtac-tactcca 58
Query: 832 gttgctgggcgaattgaggttgcagttggccgtgatcctaataatcgga 880
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gttgctgg-cgaattgaggttgcagttggccgtgatcctaataatcgga 106