Miyakogusa Predicted Gene
- Lj1g3v2217460.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2217460.1 Non Chatacterized Hit- tr|I3MBX5|I3MBX5_SPETR
Uncharacterized protein (Fragment) OS=Spermophilus
tri,44.04,2e-18,La,RNA-binding protein Lupus La; seg,NULL; Domain in
the RNA-binding Lupus La protein;,RNA-binding p,CUFF.28719.1
(1524 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57839 similar to UniRef100_A7NSQ5 Cluster: Chromosome... 1090 0.0
gnl|LJGI|TC63789 similar to UniRef100_A7NSQ5 Cluster: Chromosome... 900 0.0
gnl|LJGI|TC72775 similar to UniRef100_A7NSQ5 Cluster: Chromosome... 192 4e-48
>gnl|LJGI|TC57839 similar to UniRef100_A7NSQ5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 818
Score = 1090 bits (550), Expect = 0.0
Identities = 550/550 (100%)
Strand = Plus / Plus
Query: 1 atggttatcgcagccgattcttcttcccctaacactactactgctgccgccaacaacagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atggttatcgcagccgattcttcttcccctaacactactactgctgccgccaacaacagc 328
Query: 61 ccgcgaaaaaacctaccttctccctgggcccaggtcgttcgctgtgccgactcagagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccgcgaaaaaacctaccttctccctgggcccaggtcgttcgctgtgccgactcagagcca 388
Query: 121 ctccaccaccaatcgctgccttcatcatcttcctctacctcctccttgtccgctgattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctccaccaccaatcgctgccttcatcatcttcctctacctcctccttgtccgctgattcc 448
Query: 181 gatagctccgatgctgataaggcgaagaacgccggtgccccgaagaaacccgcttggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gatagctccgatgctgataaggcgaagaacgccggtgccccgaagaaacccgcttggaag 508
Query: 241 atgccacccagtgacgtcgccgaggttagtcctgtaatgggtgctgtgtcttggcccgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atgccacccagtgacgtcgccgaggttagtcctgtaatgggtgctgtgtcttggcccgct 568
Query: 301 ttatctgaggccgccaaactttctgtgaaaccaacatctgactcctccacaaccgatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttatctgaggccgccaaactttctgtgaaaccaacatctgactcctccacaaccgatgga 628
Query: 361 tcactctccactactcaggggcctgttactccacactcccctcagacacaagctaatagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcactctccactactcaggggcctgttactccacactcccctcagacacaagctaatagc 688
Query: 421 aatagcaatgtgaaacctagtcctgcaatgaacactgatatgcctaatagacaaagatcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aatagcaatgtgaaacctagtcctgcaatgaacactgatatgcctaatagacaaagatcg 748
Query: 481 acaaagcagggaggcagcaatagcaatgggcctgctcctgtgcggggtaacttcaccaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acaaagcagggaggcagcaatagcaatgggcctgctcctgtgcggggtaacttcaccaac 808
Query: 541 actgccccga 550
||||||||||
Sbjct: 809 actgccccga 818
>gnl|LJGI|TC63789 similar to UniRef100_A7NSQ5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 752
Score = 900 bits (454), Expect = 0.0
Identities = 454/454 (100%)
Strand = Plus / Plus
Query: 1071 cttgaccgatgtgattataaagcagattgattattattttagtgatactaatttagtgaa 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgaccgatgtgattataaagcagattgattattattttagtgatactaatttagtgaa 60
Query: 1131 agacaactatttaaggtcaaacatggacgaacagggttgggttccaattactttgattgc 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agacaactatttaaggtcaaacatggacgaacagggttgggttccaattactttgattgc 120
Query: 1191 aaacttccctcgagttaaaagtttgacaagcaacgttgagttgattctggattccttgaa 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaacttccctcgagttaaaagtttgacaagcaacgttgagttgattctggattccttgaa 180
Query: 1251 aacttcctctgtcgtggaagtgcagggtgacaagttgaggaagcgtgatgattggatgaa 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacttcctctgtcgtggaagtgcagggtgacaagttgaggaagcgtgatgattggatgaa 240
Query: 1311 gtggctgccctccacccaacgtgaggttgattctagttcaatgtccactggtgaatcaaa 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtggctgccctccacccaacgtgaggttgattctagttcaatgtccactggtgaatcaaa 300
Query: 1371 ttacaataacatagctcgtgattttgaaaaaataactctgaatgaagcacttctagataa 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttacaataacatagctcgtgattttgaaaaaataactctgaatgaagcacttctagataa 360
Query: 1431 agttaattttgatcctaccacaaatggggaggctatagaatcttccgatcagtctcaatt 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agttaattttgatcctaccacaaatggggaggctatagaatcttccgatcagtctcaatt 420
Query: 1491 cacaattggtgatgctgcaaagagttgcaattaa 1524
||||||||||||||||||||||||||||||||||
Sbjct: 421 cacaattggtgatgctgcaaagagttgcaattaa 454
>gnl|LJGI|TC72775 similar to UniRef100_A7NSQ5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 1435
Score = 192 bits (97), Expect = 4e-48
Identities = 199/233 (85%)
Strand = Plus / Plus
Query: 1090 aagcagattgattattattttagtgatactaatttagtgaaagacaactatttaaggtca 1149
||||| ||||||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct: 615 aagcaaattgattattattttagtgatcttaatttagtgaaagatgagtatttaaggtcc 674
Query: 1150 aacatggacgaacagggttgggttccaattactttgattgcaaacttccctcgagttaaa 1209
|||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct: 675 aacatggatgaacagggttgggttccaattacgttgatagcaaactttcctcgggttagg 734
Query: 1210 agtttgacaagcaacgttgagttgattctggattccttgaaaacttcctctgtcgtggaa 1269
||||||||||||||| | |||| || ||||||| || | |||||| |||| ||||||
Sbjct: 735 agtttgacaagcaacatccagttaatattggattcgttaagaacttctactgttgtggaa 794
Query: 1270 gtgcagggtgacaagttgaggaagcgtgatgattggatgaagtggctgccctc 1322
|||||||||||| |||||||| |||| |||| ||||||| ||||| |||||
Sbjct: 795 gtgcagggtgacctgttgaggaggcgtaatgactggatgagatggcttccctc 847