Miyakogusa Predicted Gene
- Lj1g3v2173050.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2173050.1 tr|B9H4W6|B9H4W6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_559829 PE=4 SV=1,38.75,1e-17,
,CUFF.28688.1
(1536 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68592 weakly similar to UniRef100_A7PCY5 Cluster: Chr... 1941 0.0
gnl|LJGI|BP054542 200 2e-50
gnl|LJGI|TC80546 weakly similar to UniRef100_UPI000050FD8B Clust... 78 2e-13
>gnl|LJGI|TC68592 weakly similar to UniRef100_A7PCY5 Cluster: Chromosome chr17
scaffold_12, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 1066
Score = 1941 bits (979), Expect = 0.0
Identities = 1011/1019 (99%), Gaps = 2/1019 (0%)
Strand = Plus / Plus
Query: 520 gcaccaaattggctgaatgctgctatttatgcatccaaacaagatttgaagcaaagtttt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcaccaaattggctgaatgctgctatttatgcatccaaacaagatttgaagcaaagtttt 64
Query: 580 tcttctggtgataagaagcagacttctgaagttgtgattcgaagaaagtcatggaagaag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tcttctggtgataagaagcagacttctgaagttgtgattcgaagaaagtcatggaagaag 124
Query: 640 tgtgcagctcatgttcacatcagtcatctcatccggagtttagaggtgccaaatggacag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgtgcagctcatgttcacatcagtcatctcatccggagtttagaggtgccaaatggacag 184
Query: 700 gttgcaaaagaaccagaccgagtacaccatggaacagaatgtggagttcttttggaaaca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gttgcaaaagaaccagaccgagtacaccatggaacagaatgtggagttcttttggaaaca 244
Query: 760 cataacttgaattggatgagcaatagtaatcgttctgcatctggaattgttcattctgct 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cataacttgaattggatgagcaatagtaatcgttctgcatctggaattgttcattctgct 304
Query: 820 actgtcaggagttcccatgaaactaagagtggtactcctcaacagcacagtcgttatcat 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 actgtcaggagttcccatgaaactaagagtggtactcctcaacagcacagtcgttatcat 364
Query: 880 gacatgtctcaaactcctgcacctggggtgtatggtcctcaaaagcaaaatttcaacttc 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gacatgtctcaaactcctgcacctggggtgtatggtcctcaaaagcaaaatttcaacttc 424
Query: 940 ttgtccttgtctgttggaggtactggattaaaggtcaacaatggttttaatgaaggcaga 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgtccttgtctgttggaggtactggattaaaggtcaacaatggttttaatgaaggcaga 484
Query: 1000 agtaggttggaattgttgtcaaaatcccaagtgccttattttcagtcgttacaacagcag 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtaggttggaattgttgtcaaaatcccaagtgccttattttcagtcgttacaacagcag 544
Query: 1060 catgggctcatgccattacctacgcctcaaagtcaatatgcctcctccacttcttacctt 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 catgggctcatgccattacctacgcctcaaagtcaatatgcctcctccacttcttacctt 604
Query: 1120 gatcagcttcccgcagcaggaccacaggttcgattgcagcaacctcattattatggcacc 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gatcagcttcccgcagcaggaccacaggttcgattgcagcaacctcattattatggcacc 664
Query: 1180 ccattatgtggaactcaatacagttcaacagcttcatataaacaacagcaacaaagcttt 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 665 ccattatgtggaactcaatacagttcaacagcttcatataaacaacagcaaccaagcttt 724
Query: 1240 tgggcagttcaacttgcagctaatggtggttcttcttctgtaaattgcaacattgtgagg 1299
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 725 tgggccgttcaacttgcagctaatggtggttcttcttctgtaaattgcaaccttgtgagg 784
Query: 1300 gcgcagtatcctaattggcaacaaaatgggagagttgattcttgtgca-gtgagtcca-t 1357
|||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct: 785 gcgccgtatcctaattggcaaccaaatgggagagttgattcttgtgcacgtgagtccact 844
Query: 1358 ttgcccaagtgatcagttcaatctctcagcaaaagccattaacccttgcttcttcattgc 1417
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttgccccagtgatcagttcaatctctcagcaaaagccattaacccttgcttcttcattgc 904
Query: 1418 acccatccagaacaattgggctggacattcatcttccttctgtttgtgaagaaagtatgg 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 acccatccagaacaattgggctggacattcatcttccttctgtttgtgaagaaagtatgg 964
Query: 1478 ctaggttccgtagcagtggcaccccatcgctgcaattgttatgtgatgagcgtctctga 1536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 ctaggttccgtagcagtggcaccccatcgctgcaattgttatgtgatgagcgtctctga 1023
>gnl|LJGI|BP054542
Length = 325
Score = 200 bits (101), Expect = 2e-50
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1436 ggctggacattcatcttccttctgtttgtgaagaaagtatggctaggttccgtagcagtg 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggctggacattcatcttccttctgtttgtgaagaaagtatggctaggttccgtagcagtg 266
Query: 1496 gcaccccatcgctgcaattgttatgtgatgagcgtctctga 1536
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaccccatcgctgcaattgttatgtgatgagcgtctctga 225
>gnl|LJGI|TC80546 weakly similar to UniRef100_UPI000050FD8B Cluster: COG0803:
ABC-type metal ion transport system, periplasmic
component/surface adhesin; n=1; Brevibacterium linens
BL2|Rep: COG0803: ABC-type metal ion transport system,
periplasmic component/surface adhesin - Brevibacterium
linens BL2, partial (6%)
Length = 1035
Score = 77.8 bits (39), Expect = 2e-13
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 628 tcatggaagaagtgtgcagctcatgttcacatcagtcatctcatccggagtttagaggtg 687
|||||||||| ||||||||||||||| ||||| |||||| |||| |||||||||||||
Sbjct: 81 tcatggaagaggtgtgcagctcatgtccacattagtcattacatcaagagtttagaggtg 140
Query: 688 ccaaatggaca 698
||||| |||||
Sbjct: 141 ccaaaaggaca 151
Score = 69.9 bits (35), Expect = 4e-11
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 1141 ccacaggttcgattgcagcaacctcattattatggcaccccattatgtggaactcaatac 1200
||||||||||| |||||||||||||||||| |||| | | || |||||||||||||
Sbjct: 576 ccacaggttcggttgcagcaacctcattataatggtagcatgatacgtggaactcaatat 635
Query: 1201 agttcaacagcttcatataaacaacagcaacaaagcttttggg 1243
|||||||||| ||| ||||||| |||| |||| ||||||||
Sbjct: 636 agttcaacagtctcaagtaaacaagagcagcaaaacttttggg 678