Miyakogusa Predicted Gene

Lj1g3v2157640.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2157640.1 tr|G7KA43|G7KA43_MEDTR F-box protein SKIP19
OS=Medicago truncatula GN=MTR_5g062080 PE=4
SV=1,64.06,8e-17,F-box,F-box domain, cyclin-like; F-box domain,F-box
domain, cyclin-like; no description,NULL,CUFF.28656.1
         (247 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82289 weakly similar to UniRef100_Q2HSK3 Cluster: Cyc...    86   1e-16

>gnl|LJGI|TC82289 weakly similar to UniRef100_Q2HSK3 Cluster: Cyclin-like F-box; n=1;
           Medicago truncatula|Rep: Cyclin-like F-box - Medicago
           truncatula (Barrel medic), partial (50%)
          Length = 1365

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 112/135 (82%)
 Strand = Plus / Plus

                                                                       
Query: 40  gggccaaactggcttgaacttccaagagacgtaacaacaaacatacttctaaggcttggt 99
           ||||| || |||||||||||||||| |||  ||||||||| |||||||| || ||||  |
Sbjct: 812 gggcctaattggcttgaacttccaaaagagctaacaacaatcatacttcaaaagcttaat 871

                                                                       
Query: 100 gttgtagaaattgtgatgagtgcaagtcaagtgtgttctttgtggtggaacatatgcaag 159
               ||||||||||||  |||||||| | |||||| ||||||||||||||||| || |||
Sbjct: 872 accatagaaattgtgacaagtgcaagcccagtgtgctctttgtggtggaacatttgtaag 931

                          
Query: 160 gaccctctcatgtgg 174
           || || |||||||||
Sbjct: 932 gatccactcatgtgg 946