Miyakogusa Predicted Gene

Lj1g3v2139420.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2139420.1 Non Chatacterized Hit- tr|Q0ZR60|Q0ZR60_THEHA
Putative uncharacterized protein OS=Thellungiella
halo,59.49,2e-19,FAMILY NOT
NAMED,NULL,NODE_76039_length_701_cov_18.590586.path1.1
         (243 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81591 weakly similar to UniRef100_A7QE45 Cluster: Chr...   329   4e-90
gnl|LJGI|BP034930                                                      52   2e-06

>gnl|LJGI|TC81591 weakly similar to UniRef100_A7QE45 Cluster: Chromosome chr4
           scaffold_83, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome chr4 scaffold_83, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (47%)
          Length = 683

 Score =  329 bits (166), Expect = 4e-90
 Identities = 223/242 (92%), Gaps = 5/242 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtagctgaacgagctaagctgcacttagctttaacgtttttgcaattttgttatgca 60
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 54  atggtagctgaacgagctaagctgcacttagctttaacgtttttacagttttgttatgca 113

                                                                       
Query: 61  ggaaaccacatatttgtgaggattgcacttgattcaggcgtcagcaagcttgtatttcct 120
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 114 ggaaatcacatatttgtgaggattgcacttgatacaggcgtcagcaagcttgtgtttcct 173

                                                                       
Query: 121 gtctatagaaacatcactgctcttcttcttctgggtcccttagcttatttttcagagaag 180
           ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| 
Sbjct: 174 gtctatagaaacaccactgctcttcttcttctgggtcccctcgcttatttttcagagaa- 232

                                                                       
Query: 181 aaagacaggccatcaataaccagatattgtcttgtccaatttttccttctaggacttgtt 240
               ||||||||||||||||| | || |||||  | ||||||||||||||||||||||||
Sbjct: 233 ----acaggccatcaataaccggttactgtctactacaatttttccttctaggacttgtt 288

             
Query: 241 gg 242
           ||
Sbjct: 289 gg 290


>gnl|LJGI|BP034930 
          Length = 526

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 103 agcaagcttgtatttcctgtctatagaaacatcactgctcttcttcttct 152
           ||||| ||||| || ||||||||||| ||||||| |||||| ||||||||
Sbjct: 212 agcaaacttgttttccctgtctataggaacatcattgctctgcttcttct 261