Miyakogusa Predicted Gene

Lj1g3v2139400.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2139400.1 Non Chatacterized Hit- tr|C0PAS1|C0PAS1_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,43.81,3e-18,FAMILY NOT
NAMED,NULL; EamA,Drug/metabolite transporter; Multidrug resistance
efflux transporter Emr,NODE_58869_length_311_cov_13.491961.path1.1
         (318 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77901 weakly similar to UniRef100_A7QE45 Cluster: Chr...   262   1e-69
gnl|LJGI|TC81591 weakly similar to UniRef100_A7QE45 Cluster: Chr...    52   2e-06

>gnl|LJGI|TC77901 weakly similar to UniRef100_A7QE45 Cluster: Chromosome chr4
           scaffold_83, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome chr4 scaffold_83, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (18%)
          Length = 547

 Score =  262 bits (132), Expect = 1e-69
 Identities = 135/136 (99%)
 Strand = Plus / Plus

                                                                       
Query: 183 gctggcagcagcattacagatatgggctattggcaagggagggccagtgcttgcttcaat 242
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1   gctggcagcagcattacagatatgggctatcggcaagggagggccagtgcttgcttcaat 60

                                                                       
Query: 243 ttatcttcctttacagacattacttgtagccttgatgtcatccattgtttttggagaaga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttatcttcctttacagacattacttgtagccttgatgtcatccattgtttttggagaaga 120

                           
Query: 303 tttcttcttgggaggg 318
           ||||||||||||||||
Sbjct: 121 tttcttcttgggaggg 136


>gnl|LJGI|TC81591 weakly similar to UniRef100_A7QE45 Cluster: Chromosome chr4
           scaffold_83, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome chr4 scaffold_83, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (47%)
          Length = 683

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 33/34 (97%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                             
Query: 1   atgcaagcatttgttctgaaaaactactcagccc 34
           |||||||||||||||||| |||||||||||||||
Sbjct: 647 atgcaagcatttgttctg-aaaactactcagccc 679