Miyakogusa Predicted Gene
- Lj1g3v2114720.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2114720.1 CUFF.28543.1
(426 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV417291 similar to UniRef100_A0S5T8 Cluster: Superoxid... 385 e-106
gnl|LJGI|GO021342 similar to UniRef100_A7PNW9 Cluster: Chromosom... 168 2e-41
gnl|LJGI|DC599502 similar to UniRef100_Q92XP7 Cluster: Probable ... 153 1e-36
gnl|LJGI|GO027722 105 2e-22
gnl|LJGI|TC57357 similar to UniRef100_Q6Q1L6 Cluster: Cytochrome... 90 1e-17
gnl|LJGI|TC64529 similar to UniRef100_A7PNW9 Cluster: Chromosome... 56 2e-07
>gnl|LJGI|AV417291 similar to UniRef100_A0S5T8 Cluster: Superoxide dismutase; n=1;
Hydra vulgaris|Rep: Superoxide dismutase - Hydra
attenuata (Hydra) (Hydra vulgaris), partial (7%)
Length = 429
Score = 385 bits (194), Expect = e-106
Identities = 209/214 (97%)
Strand = Plus / Plus
Query: 1 atgcaccagcttcaccatgttcccagttccttcaccgcttcacaacttcgtcgagtcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 atgcaccagcttcaccatgttcccagttccttcaccgcttcacaacttcgtcgagtcttc 117
Query: 61 atggctttcaagcttcctcagttcctcctccctaccctcggatcccttccttcgttttcc 120
||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct: 118 atggcttcaaagcttcctcagttcctcatcactacccttggatcccttccttcgttttcc 177
Query: 121 attcgatgtcctcgagctccatctttgttcgccgttctagctttgtttctgctcgccaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 attcgatgtcctcgagctccatctttgttcgccgttctagctttgtttctgctcgccaaa 237
Query: 181 aaatttccatttgcactgggttttcttcctcagg 214
||||||||||||||||||||||||||||||||||
Sbjct: 238 aaatttccatttgcactgggttttcttcctcagg 271
Score = 170 bits (86), Expect = 4e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 268 gatttctgcaaaggcagttgcgtggaaattggtaatataacttacagaaggagaaccata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gatttctgcaaaggcagttgcgtggaaattggtaatataacttacagaaggagaaccata 330
Query: 328 cttctttacatttggaaaatcagagg 353
||||||||||||||||||||||||||
Sbjct: 331 cttctttacatttggaaaatcagagg 356
>gnl|LJGI|GO021342 similar to UniRef100_A7PNW9 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 552
Score = 168 bits (85), Expect = 2e-41
Identities = 131/147 (89%), Gaps = 7/147 (4%)
Strand = Plus / Plus
Query: 213 gggttactacttgaataacattatgcttcaacaagtgactcttttgattcaggaagattt 272
|||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 386 gggttattacttgaataacattatgcttcaacaagtgactcttttgatacaagaggattt 445
Query: 273 ctgcaaaggca-------gttgcgtggaaattggtaatataacttacagaaggagaacca 325
||||||||||| ||||| ||||||||| |||||| || |||||||||||||||
Sbjct: 446 ctgcaaaggcagttgcatgttgcatggaaattgataatatcacgtacagaaggagaaccg 505
Query: 326 tacttctttacatttggaaaatcagag 352
|||||||||||||||||||||||||||
Sbjct: 506 tacttctttacatttggaaaatcagag 532
Score = 147 bits (74), Expect = 6e-35
Identities = 150/175 (85%), Gaps = 9/175 (5%)
Strand = Plus / Plus
Query: 41 cacaacttcgtcgagtcttcatggctttcaagcttcctcagttcctcctccctaccctcg 100
|||||||||||||||||||||| |||| |||| ||||||| ||||| || |||||||||
Sbjct: 60 cacaacttcgtcgagtcttcatcgcttcaaagcctcctcaggtcctcatcgctaccctcg 119
Query: 101 gatcccttccttcgttttccattcgatgtcctcgagctccatctttgttcgccgttctag 160
|||| |||||||| | |||||||||||||||||||||||||||| ||||| ||
Sbjct: 120 gatctcttccttcat--------cgatgtcctcgagctccatctttgttcgtcgttccag 171
Query: 161 ctttgtttctgctcgccaaaaaatttccatttgcactgggttttcttcctcaggg 215
|| ||||| |||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 172 ctcgctttctactcgcc-aaaaatctccatttgcactgggttttcttcctcaggg 225
>gnl|LJGI|DC599502 similar to UniRef100_Q92XP7 Cluster: Probable decarboxylase; n=1;
Sinorhizobium meliloti|Rep: Probable decarboxylase -
Rhizobium meliloti (Sinorhizobium meliloti), partial
(10%)
Length = 565
Score = 153 bits (77), Expect = 1e-36
Identities = 150/174 (86%), Gaps = 9/174 (5%)
Strand = Plus / Plus
Query: 41 cacaacttcgtcgagtcttcatggctttcaagcttcctcagttcctcctccctaccctcg 100
|||| ||||||||||||||||| |||| |||| ||||||||||||| || |||||||||
Sbjct: 114 cacagcttcgtcgagtcttcatcgcttcaaagcctcctcagttcctcatcgctaccctcg 173
Query: 101 gatcccttccttcgttttccattcgatgtcctcgagctccatctttgttcgccgttctag 160
|||| |||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct: 174 gatctcttccttcgt--------cgatgtcctcgagctccatctttgttcgtcgttccag 225
Query: 161 ctttgtttctgctcgccaaaaaatttccatttgcactgggttttcttcctcagg 214
|| ||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 226 ctcgctttctactcgcc-aaaaatctccatttgcactgggttttcttcctcagg 278
Score = 91.7 bits (46), Expect = 3e-18
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 213 gggttactacttgaataacattatgcttcaacaagtgactcttttgattcagga 266
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 410 gggttattacttgaataacattatgcttcaacaagtgactcttttgatacagga 463
>gnl|LJGI|GO027722
Length = 568
Score = 105 bits (53), Expect = 2e-22
Identities = 59/61 (96%)
Strand = Plus / Minus
Query: 366 ttggaaaggcttatatgagcaaattggcatgacaggtttttggtgctcttgtcgttgaaa 425
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 550 ttggaaaggcttatatgagcaaattggcatgacaggtttttggtgctcttatcattgaaa 491
Query: 426 a 426
|
Sbjct: 490 a 490
>gnl|LJGI|TC57357 similar to UniRef100_Q6Q1L6 Cluster: Cytochrome c oxidase subunit
I; n=2; Paranoplocephala oeconomi|Rep: Cytochrome c
oxidase subunit I - Paranoplocephala oeconomi, partial
(10%)
Length = 1065
Score = 89.7 bits (45), Expect = 1e-17
Identities = 85/97 (87%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 117 ttccattcgatgtcctcgagctccatctttgttcgccgttctagctttgtttctgctcgc 176
||||| ||| ||| |||| ||||||||| ||||||| | || |||| |||||||||||||
Sbjct: 141 ttccaatcgctgttctcgggctccatctctgttcgctggtccagctctgtttctgctcgc 200
Query: 177 caaaaaatttccatttgcactgggttttcttcctcag 213
| |||||| ||| ||||||||||||||||||||||||
Sbjct: 201 c-aaaaatctccctttgcactgggttttcttcctcag 236
>gnl|LJGI|TC64529 similar to UniRef100_A7PNW9 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 729
Score = 56.0 bits (28), Expect = 2e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 268 gatttctgcaaaggcagttgcgtggaaattggtaatataacttacagaaggagaaccata 327
|||||| |||||| ||||| | |||||||| | || | || ||||||||||||||||||
Sbjct: 662 gatttcagcaaagacagtttctgggaaattgatcatgtcacatacagaaggagaaccata 721
Query: 328 cttcttta 335
||||||||
Sbjct: 722 cttcttta 729