Miyakogusa Predicted Gene
- Lj1g3v2098300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2098300.1 Non Chatacterized Hit- tr|D7M6A7|D7M6A7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,36.7,6e-19,WGG,Pre-rRNA-processing protein TSR2; seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.28514.1
(738 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66384 weakly similar to UniRef100_A7Q5T8 Cluster: Chr... 1090 0.0
gnl|LJGI|TC59350 similar to UniRef100_A7Q5T8 Cluster: Chromosome... 519 e-147
>gnl|LJGI|TC66384 weakly similar to UniRef100_A7Q5T8 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (48%)
Length = 680
Score = 1090 bits (550), Expect = 0.0
Identities = 567/570 (99%), Gaps = 2/570 (0%)
Strand = Plus / Plus
Query: 1 atggagggttcaaagtttctgcaaggtgagtcgaagagagttttcagtgaaggcattgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 atggagggttcaaagtttctgcaaggtgagtcgaagagagttttcagtgaaggcattgat 152
Query: 61 ttggttctgaatcggtggtcggcgctgcaaacagccgttgagaacgaatggggtggccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ttggttctgaatcggtggtcggcgctgcaaacagccgttgagaacgaatggggtggccgt 212
Query: 121 gattcaaacctcaaagcgcatcaactcgccgctgacgtgctttcctggttcacccaatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gattcaaacctcaaagcgcatcaactcgccgctgacgtgctttcctggttcacccaatcc 272
Query: 181 aaagagccgctttatattgatgacctagaagccatattcgatgaaggaatgctttctcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaagagccgctttatattgatgacctagaagccatattcgatgaaggaatgctttctcta 332
Query: 241 aatgtagaggttgaggatggaagcattgaagaggtagctggaaatttaatggctatgcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aatgtagaggttgaggatggaagcattgaagaggtagctggaaatttaatggctatgcat 392
Query: 301 gacgaatgcgtagagggtaattttaggtccattgatatactcagggaagccaatattaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gacgaatgcgtagagggtaattttaggtccattgatatactcagggaagccaatattaag 452
Query: 361 caagctgctcgtcctcgactagcacagattgtcaacgatgatgaagatgaagacagtgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 caagctgctcgtcctcgactagcacagattgtcaacgatgatgaagatgaagacagtgat 512
Query: 421 aatgatgagaacattattgggggtgataactcttcaaacatggatgtggacatccaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aatgatgagaacattattgggggtgataactcttcaaacatggatgtggacatccaaaat 572
Query: 481 tttgagtcagacatgaattcagtaaacaagccagctaatgaacctctgtcaaaggctgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 573 tttgagtcagacatgaattcagtaaacaagccagctaatgaacctctgtcaaa-gctgca 631
Query: 541 gctgaagctgatgacggatgggttgccgtt 570
|||| |||||||||| ||||||||||||||
Sbjct: 632 gctg-agctgatgacagatgggttgccgtt 660
>gnl|LJGI|TC59350 similar to UniRef100_A7Q5T8 Cluster: Chromosome chr14 scaffold_54,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_54, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (59%)
Length = 1120
Score = 519 bits (262), Expect = e-147
Identities = 471/541 (87%), Gaps = 6/541 (1%)
Strand = Plus / Plus
Query: 20 tgcaaggtgagtcgaagagagttttcagtgaaggcattgatttggttctgaatcggtggt 79
|||||||||| ||| |||||||||| |||||| |||| ||||||||||| ||||||||
Sbjct: 288 tgcaaggtgacgcgataagagttttcaatgaagggattggtttggttctgagtcggtggt 347
Query: 80 cggcgctgcaaacagccgttgagaacgaatggggtggccgtgattcaaacctcaaagcgc 139
||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 348 cggcgcttcaaacagccgttgagaacgaatggggtggccgtgattccaagctcaaagctc 407
Query: 140 atcaactcgccgctgacgtgctttcctggttcacccaatccaaagagccgctttatattg 199
|||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||| |
Sbjct: 408 atcaactcgccgatgacgtgctttcttggttcacgaaatccaaagagccgcgttatatcg 467
Query: 200 atgacctagaagccatattcgatgaaggaatgctttctctaaatgtagaggttgaggatg 259
||||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 468 atgacctcgaagccatacttgatgaaggcatgctttcactaaacgtagaggttgaggatg 527
Query: 260 gaagcattgaagaggtagctggaaatttaatggctatgcatgacgaatgcgtagagggta 319
||||| | ||||||||||||| |||| | |||| ||||||||| |||||| |||| ||||
Sbjct: 528 gaagcgtcgaagaggtagctgaaaatctgatggttatgcatgaagaatgcttagaaggta 587
Query: 320 attttaggtccattgatatactcagggaagccaatattaagcaagctgctcgtcctcgac 379
|||||||||| ||||| || |||| |||||||||| |||| |||||||||| ||||||
Sbjct: 588 attttaggtctattgagattctcaaggaagccaatcttaaacaagctgctcatcctcgtg 647
Query: 380 tagcacagattgtcaacgat------gatgaagatgaagacagtgataatgatgagaaca 433
|| ||||||||||||| ||| ||||||||||||||| |||||||||||| ||||
Sbjct: 648 taacacagattgtcaatgatgatgaagatgaagatgaagacgatgataatgatgaaaaca 707
Query: 434 ttattgggggtgataactcttcaaacatggatgtggacatccaaaattttgagtcagaca 493
| ||||||| | ||||||||||||||||||||||||||| | ||| | ||| |||||||
Sbjct: 708 tcattggggctagtaactcttcaaacatggatgtggacattccaaaatctgaatcagaca 767
Query: 494 tgaattcagtaaacaagccagctaatgaacctctgtcaaaggctgcagctgaagctgatg 553
||||||||||||||| ||||| ||||| |||| |||||| |||||||||||||||||
Sbjct: 768 tgaattcagtaaacaggccagttaatgggactcttccaaaggttgcagctgaagctgatg 827
Query: 554 a 554
|
Sbjct: 828 a 828