Miyakogusa Predicted Gene
- Lj1g3v2095820.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2095820.1 Non Chatacterized Hit- tr|A5BAS1|A5BAS1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,60,7e-19,UNCHARACTERIZED,NULL,CUFF.28476.1
(405 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS348619 homologue to UniRef100_A2A1E8 Cluster: Nucleop... 78 5e-14
gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleopo... 78 5e-14
gnl|LJGI|TC69255 similar to UniRef100_A7Q6S3 Cluster: Chromosome... 62 3e-09
gnl|LJGI|FS354479 similar to UniRef100_A6YQS1 Cluster: 60 kDa ch... 58 4e-08
gnl|LJGI|TC77769 similar to UniRef100_A7Q6S3 Cluster: Chromosome... 54 7e-07
>gnl|LJGI|FS348619 homologue to UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus
japonicus|Rep: Nucleoporin - Lotus japonicus, partial
(15%)
Length = 637
Score = 77.8 bits (39), Expect = 5e-14
Identities = 81/94 (86%), Gaps = 7/94 (7%)
Strand = Plus / Minus
Query: 104 gatggtatcggattaagattactgtgagatgggagg-----acagtgaaaat--ctctct 156
||||||| |||||||||||||||||||||||| ||| |||||||| || || | |
Sbjct: 311 gatggtaccggattaagattactgtgagatggaaggacagaacagtgaagatggcttttt 252
Query: 157 tttggaattcctgctagagttgttcaatatgaag 190
||| ||||||||||||||||||||||||||||||
Sbjct: 251 ttttgaattcctgctagagttgttcaatatgaag 218
>gnl|LJGI|TC58967 homologue to UniRef100_A2A1E8 Cluster: Nucleoporin; n=1; Lotus
japonicus|Rep: Nucleoporin - Lotus japonicus, partial
(23%)
Length = 1122
Score = 77.8 bits (39), Expect = 5e-14
Identities = 81/94 (86%), Gaps = 7/94 (7%)
Strand = Plus / Plus
Query: 104 gatggtatcggattaagattactgtgagatgggagg-----acagtgaaaat--ctctct 156
||||||| |||||||||||||||||||||||| ||| |||||||| || || | |
Sbjct: 774 gatggtaccggattaagattactgtgagatggaaggacagaacagtgaagatggcttttt 833
Query: 157 tttggaattcctgctagagttgttcaatatgaag 190
||| ||||||||||||||||||||||||||||||
Sbjct: 834 ttttgaattcctgctagagttgttcaatatgaag 867
>gnl|LJGI|TC69255 similar to UniRef100_A7Q6S3 Cluster: Chromosome chr12 scaffold_57,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_57, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 775
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 163 attcctgctagagttgttcaatatgaagctcctga 197
|||||||||||||||||||| ||||||||||||||
Sbjct: 370 attcctgctagagttgttcagtatgaagctcctga 404
>gnl|LJGI|FS354479 similar to UniRef100_A6YQS1 Cluster: 60 kDa chaperonin; n=2;
Bacillus megaterium|Rep: 60 kDa chaperonin - Bacillus
megaterium, partial (6%)
Length = 716
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 104 gatggtatcggattaagattactgtgagatgggagga 140
||||||| |||||||||||||||||||||||| ||||
Sbjct: 450 gatggtaccggattaagattactgtgagatggaagga 414
>gnl|LJGI|TC77769 similar to UniRef100_A7Q6S3 Cluster: Chromosome chr12 scaffold_57,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_57, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 683
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 163 attcctgctagagttgttcaatatgaagctcctga 197
|||||||||||||||| ||| ||||||||||||||
Sbjct: 366 attcctgctagagttgctcagtatgaagctcctga 400