Miyakogusa Predicted Gene

Lj1g3v2095670.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2095670.1 Non Chatacterized Hit- tr|B9R6S8|B9R6S8_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.18,0.000000000000008,seg,NULL; coiled-coil,NULL,CUFF.28462.1
         (649 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81287                                                      492   e-138

>gnl|LJGI|TC81287 
          Length = 1368

 Score =  492 bits (248), Expect = e-138
 Identities = 338/366 (92%), Gaps = 4/366 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttgaagcaattgcctaacagaaaccagaggacaaaaggctccatgataaaacaaggt 60
           |||| |||||||||| | |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 367 atgtcgaagcaattgtcaaacagaaatcagaggacaaaaggttccatgataaaacaaggt 308

                                                                       
Query: 61  ttcaaaatatttactttaattgctgttatcatctggttgctttttcagctcaaccattca 120
           ||||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||
Sbjct: 307 ttcaaaatatttactttaattgctgttatcatcgggttactttttctgcacaaccattca 248

                                                                       
Query: 121 ctagataagaggaagcctaatgaggacaac---acaaaagtatttgaaaagctgaaggct 177
           ||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 247 ctagataagaggaaggctaatgaggacaactctacaaaagtatttgaaaagctgaaggct 188

                                                                       
Query: 178 agtcatgaatccaaaaaacttgggagaaaatggttccagccttggataaataagccatat 237
           ||||||||| ||||||| ||||| |||||| | ||||| || ||||||||||||||||||
Sbjct: 187 agtcatgaaaccaaaaa-cttggaagaaaaggattccaaccatggataaataagccatat 129

                                                                       
Query: 238 ggattgatggaagaaacagaagaaagcgaatccgagagggtagtggaacaaagcattggt 297
           |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct: 128 ggattgatggaagaaacaaaagaaagcgaacccaagagggtagtggaacaaagcattggt 69

                                                                       
Query: 298 ggcgatgatgacattgttgaacctgaggaagtggaagacctgattgatgaagaagacaag 357
           ||  |||||||||||||||||||  ||||||||||||||| |||||||||||||||||||
Sbjct: 68  gggaatgatgacattgttgaaccctaggaagtggaagaccagattgatgaagaagacaag 9

                 
Query: 358 gagaaa 363
           ||||||
Sbjct: 8   gagaaa 3