Miyakogusa Predicted Gene

Lj1g3v2036590.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v2036590.1 tr|A9T5D1|A9T5D1_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,48.94,2e-16,"Winged helix" DNA-binding domain,NULL;
La,RNA-binding protein Lupus La; no description,Winged
helix,gene.Ljchr1_pseudomol_20120830.path1.gene4765.1
         (297 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57686 similar to UniRef100_A7P5B6 Cluster: Chromosome...   561   e-160

>gnl|LJGI|TC57686 similar to UniRef100_A7P5B6 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (72%)
          Length = 1605

 Score =  561 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcggaaaaccgtctctgaaagcgaagatggcatggttagtttggctttgctttgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atgcggaaaaccgtctctgaaagcgaagatggcatggttagtttggctttgctttgttct 226

                                                                       
Query: 61  ttcaaccgaatgcgccagcaccttaatttgggtgatgtaaaggctgaggatgtgactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttcaaccgaatgcgccagcaccttaatttgggtgatgtaaaggctgaggatgtgactgaa 286

                                                                       
Query: 121 gatactgttaaggctgttgctcatgttttgagaaattctgcttcactcaaagtctctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gatactgttaaggctgttgctcatgttttgagaaattctgcttcactcaaagtctctgaa 346

                                                                       
Query: 181 gatgggaaaaaagttggcaggacaactgaacttccaaagaccgaagaggtcattgagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gatgggaaaaaagttggcaggacaactgaacttccaaagaccgaagaggtcattgagcag 406

                                                      
Query: 241 gtggatataagaacaattgctgcatcaccatttcaatatgatc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtggatataagaacaattgctgcatcaccatttcaatatgatc 449