Miyakogusa Predicted Gene
- Lj1g3v1931370.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1931370.1 tr|G7JBQ4|G7JBQ4_MEDTR Transcription elongation
factor A protein OS=Medicago truncatula
GN=MTR_3g108,68.35,0,TFIIS_CENTRAL,Transcription elongation factor
S-II, central domain; TFIIS_M,Transcription elongation,CUFF.28179.1
(3438 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70308 similar to UniRef100_A7P5H0 Cluster: Chromosome... 1556 0.0
gnl|LJGI|FS357407 similar to UniRef100_A7P5H0 Cluster: Chromosom... 1191 0.0
gnl|LJGI|TC79597 UniRef100_A8JFU0 Cluster: Predicted protein; n=... 383 e-105
gnl|LJGI|TC74366 383 e-105
>gnl|LJGI|TC70308 similar to UniRef100_A7P5H0 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (6%)
Length = 1072
Score = 1556 bits (785), Expect = 0.0
Identities = 785/785 (100%)
Strand = Plus / Plus
Query: 2654 gtctaattggtgttgttgtatggagaaaaactaatttaacatcgactatatcacccaccc 2713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctaattggtgttgttgtatggagaaaaactaatttaacatcgactatatcacccaccc 60
Query: 2714 acaaacatagctctaaaagacaatcatcctttaataggaggcagcaagatacaaatgtga 2773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaaacatagctctaaaagacaatcatcctttaataggaggcagcaagatacaaatgtga 120
Query: 2774 atgctaataacactcacaaagcagtgccctcgaagggcattaaggcagccgagaatggac 2833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgctaataacactcacaaagcagtgccctcgaagggcattaaggcagccgagaatggac 180
Query: 2834 cttcaggtggtggtggtgttgacgatgatgatgatgttcctcctggattcgggccaggaa 2893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttcaggtggtggtggtgttgacgatgatgatgatgttcctcctggattcgggccaggaa 240
Query: 2894 cgaccagagtcgaggatgacctcccagagtttaatttctccaggagctcaaacccaccac 2953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgaccagagtcgaggatgacctcccagagtttaatttctccaggagctcaaacccaccac 300
Query: 2954 cccacctggtccagaaacctctaggacctggtatggtcccgtttcactcggttagcaaaa 3013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cccacctggtccagaaacctctaggacctggtatggtcccgtttcactcggttagcaaaa 360
Query: 3014 ccccttcgcgtcccgcggaacaaatgagggaacttgtgctcaaatatgggcaaaaccaag 3073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccccttcgcgtcccgcggaacaaatgagggaacttgtgctcaaatatgggcaaaaccaag 420
Query: 3074 caaatgtatcttcagtaaactggcaggataaatttggaggtacaattcaaccctggaatg 3133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaatgtatcttcagtaaactggcaggataaatttggaggtacaattcaaccctggaatg 480
Query: 3134 atgatgatgatgacatacctgaatggcagcctcaatcctcgttgaatcagtttcctccac 3193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgatgatgatgacatacctgaatggcagcctcaatcctcgttgaatcagtttcctccac 540
Query: 3194 aacagacaatgcgtaattctcatcttagaccacacacccagaatcaaccatttgttggtt 3253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacagacaatgcgtaattctcatcttagaccacacacccagaatcaaccatttgttggtt 600
Query: 3254 cacctatggcagcacagtatctgcaacaagcacctatgaatgtaaaccacgttcagagta 3313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cacctatggcagcacagtatctgcaacaagcacctatgaatgtaaaccacgttcagagta 660
Query: 3314 atcttaaccctcaatgggttccacgtagccagggtgataacactcaaccaagtggtggat 3373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atcttaaccctcaatgggttccacgtagccagggtgataacactcaaccaagtggtggat 720
Query: 3374 atggagcacctgcacaaggaactggctggtctcaacatgtttctagaagtaggagatttt 3433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atggagcacctgcacaaggaactggctggtctcaacatgtttctagaagtaggagatttt 780
Query: 3434 agctt 3438
|||||
Sbjct: 781 agctt 785
>gnl|LJGI|FS357407 similar to UniRef100_A7P5H0 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (11%)
Length = 605
Score = 1191 bits (601), Expect = 0.0
Identities = 604/605 (99%)
Strand = Plus / Minus
Query: 2074 aatggtaagaatcaagctgacatgaaaccaactgatgatcatgccaaggagaggtcaact 2133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aatggtaagaatcaagctgacatgaaaccaactgatgatcatgccaaggagaggtcaact 546
Query: 2134 gatgacatgaagtctgcatcgaacgatgctgtggtgagacccagtcagttgcatgctgaa 2193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gatgacatgaagtctgcatcgaacgatgctgtggtgagacccagtcagttgcatgctgaa 486
Query: 2194 cagaaatttggtaatgataatgtatattcaaaaactgcagtcctcattaagggtgaatgc 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cagaaatttggtaatgataatgtatattcaaaaactgcagtcctcattaagggtgaatgc 426
Query: 2254 ctctgggagggaatgcttcaactgaatatctctaccactcattcagtcataagcatcttc 2313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctctgggagggaatgcttcaactgaatatctctaccactcattcagtcataagcatcttc 366
Query: 2314 aaaagtggtgagaaaacctctacaaaagactggcctgggtttcttgacatcaagggaagg 2373
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaagtggtgagaaaacctgtacaaaagactggcctgggtttcttgacatcaagggaagg 306
Query: 2374 gttcgactcgagccatttgagaagtttctgcaagagcttccacagtcaagaactcgtgct 2433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gttcgactcgagccatttgagaagtttctgcaagagcttccacagtcaagaactcgtgct 246
Query: 2434 atcatggttttacattttgtttccaaagggtcgtcccctgaggagcaatcaaccatcaaa 2493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atcatggttttacattttgtttccaaagggtcgtcccctgaggagcaatcaaccatcaaa 186
Query: 2494 gaggtagctgagtcgtacattacagatgagagagtgggatttgctgagcctgtgaatgga 2553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaggtagctgagtcgtacattacagatgagagagtgggatttgctgagcctgtgaatgga 126
Query: 2554 gttgaactttacttttgcccacctcataagaaaacagttgaaatgctgggcaagattctt 2613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gttgaactttacttttgcccacctcataagaaaacagttgaaatgctgggcaagattctt 66
Query: 2614 ccaaaggaacaaattgaggcagttaattctattgataatggtctaattggtgttgttgta 2673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ccaaaggaacaaattgaggcagttaattctattgataatggtctaattggtgttgttgta 6
Query: 2674 tggag 2678
|||||
Sbjct: 5 tggag 1
>gnl|LJGI|TC79597 UniRef100_A8JFU0 Cluster: Predicted protein; n=1; Chlamydomonas
reinhardtii|Rep: Predicted protein - Chlamydomonas
reinhardtii, partial (3%)
Length = 621
Score = 383 bits (193), Expect = e-105
Identities = 193/193 (100%)
Strand = Plus / Plus
Query: 1 atgtccaacaatcttgtttcgcagcccatgcctagcatgcccatggctcagttggagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atgtccaacaatcttgtttcgcagcccatgcctagcatgcccatggctcagttggagcca 245
Query: 61 attttgaacaaggttgattcgtcggggaggcagatggaattggggattttgggtggtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attttgaacaaggttgattcgtcggggaggcagatggaattggggattttgggtggtcct 305
Query: 121 gtatcgactgatcctatgtcgcggcctccgggtgcctcgaatgatcatgctgggttatcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtatcgactgatcctatgtcgcggcctccgggtgcctcgaatgatcatgctgggttatcg 365
Query: 181 agtgggcgggtag 193
|||||||||||||
Sbjct: 366 agtgggcgggtag 378
Score = 371 bits (187), Expect = e-101
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 234 tagtcataggggattgcatcagcttcatttacctagcaggcaatccgtgcaagtgggggc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tagtcataggggattgcatcagcttcatttacctagcaggcaatccgtgcaagtgggggc 490
Query: 294 acagcaactgtcagcaacgactcccaagcggaaggcgccgatggaattgtcaccgagtgg 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 491 acagcaactgtcagcaacgactcccaagcggaaggcgccgatggaattgtcaccaagtgg 550
Query: 354 ctctgtggtgtctaacaagcgggttgcgcaaatggggcctagaccttggttgcagcaagg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctctgtggtgtctaacaagcgggttgcgcaaatggggcctagaccttggttgcagcaagg 610
Query: 414 ttctaatgcat 424
|||||||||||
Sbjct: 611 ttctaatgcat 621
>gnl|LJGI|TC74366
Length = 501
Score = 383 bits (193), Expect = e-105
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 1 atgtccaacaatcttgtttcgcagcccatgcctagcatgcccatggctcagttggagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgtccaacaatcttgtttcgcagcccatgcctagcatgcccatggctcagttggagcca 296
Query: 61 attttgaacaaggttgattcgtcggggaggcagatggaattggggattttgggtggtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 attttgaacaaggttgattcgtcggggaggcagatggaattggggattttgggtggtcct 236
Query: 121 gtatcgactgatcctatgtcgcggcctccgggtgcctcgaatgatcatgctgggttatcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gtatcgactgatcctatgtcgcggcctccgggtgcctcgaatgatcatgctgggttatcg 176
Query: 181 agtgggcgggtag 193
|||||||||||||
Sbjct: 175 agtgggcgggtag 163
Score = 198 bits (100), Expect = 2e-49
Identities = 114/116 (98%), Gaps = 2/116 (1%)
Strand = Plus / Minus
Query: 234 tagtcataggggattgcatcagcttcatttacctagcaggcaatccg-tgcaagtggggg 292
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 116 tagtcataggggattgcatcagcttcatttacctagcaggcaatccgttgcaagtggggg 57
Query: 293 cacagcaac-tgtcagcaacgactcccaagcggaaggcgccgatggaattgtcacc 347
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 cacagcaacttgtcagcaacgactcccaagcggaaggcgccgatggaattgtcacc 1