Miyakogusa Predicted Gene

Lj1g3v1911730.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1911730.1 tr|G7JB32|G7JB32_MEDTR Rna-dependent RNA
polymerase OS=Medicago truncatula GN=MTR_3g107390 PE=4
SV=1,81.15,0,RNA-DEPENDENT RNA POLYMERASE,RNA-dependent RNA
polymerase, eukaryotic-type; RdRP,RNA-dependent RNA p,CUFF.28114.1
         (3606 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70548 weakly similar to UniRef100_A7P5T3 Cluster: Chr...   837   0.0  
gnl|LJGI|AV778353                                                      72   3e-11

>gnl|LJGI|TC70548 weakly similar to UniRef100_A7P5T3 Cluster: Chromosome chr4
           scaffold_6, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr4 scaffold_6, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (11%)
          Length = 618

 Score =  837 bits (422), Expect = 0.0
 Identities = 422/422 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatctaggagggagtgagaaggaatcagtggttacacaagtgagcattggaggtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atggatctaggagggagtgagaaggaatcagtggttacacaagtgagcattggaggtttt 256

                                                                       
Query: 61  gatagtgaagtgaaagcacatgatcttgctgagtttctggaaaatagaattggacttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gatagtgaagtgaaagcacatgatcttgctgagtttctggaaaatagaattggacttgtt 316

                                                                       
Query: 121 tacagatgcaggctgaaaacatcttggacaccgccggagtcctatccggaatttaatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tacagatgcaggctgaaaacatcttggacaccgccggagtcctatccggaatttaatgtc 376

                                                                       
Query: 181 gcggatactgcattggttaagaggacagatgactacaagaaggtggagcctcatgccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcggatactgcattggttaagaggacagatgactacaagaaggtggagcctcatgccttt 436

                                                                       
Query: 241 gtgcattttgcgttgccggaatctgcgactgaggcgcttgatgcttcgggtagttgtgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgcattttgcgttgccggaatctgcgactgaggcgcttgatgcttcgggtagttgtgat 496

                                                                       
Query: 301 ctaatgtgggagggcaaaccgttgaaggttatcagcgggcctcagaatccgtactttttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctaatgtgggagggcaaaccgttgaaggttatcagcgggcctcagaatccgtactttttg 556

                                                                       
Query: 361 aaccagaggaggagaaaggagaccccttttaagctgtctgatgtgcttgttgaaattggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaccagaggaggagaaaggagaccccttttaagctgtctgatgtgcttgttgaaattggg 616

             
Query: 421 ac 422
           ||
Sbjct: 617 ac 618


>gnl|LJGI|AV778353 
          Length = 400

 Score = 71.9 bits (36), Expect = 3e-11
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 3549 atttgattcaactaagccagttggttctctggcaaagtatctatcagaaaggttat 3604
            |||||||||||||||||| || | ||||||||| ||||||||||||| ||||||||
Sbjct: 400  atttgattcaactaagcccgtcgcttctctggccaagtatctatcagtaaggttat 345