Miyakogusa Predicted Gene

Lj1g3v1911640.4
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1911640.4 Non Chatacterized Hit- tr|B6TQN1|B6TQN1_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,40.13,1e-18,DUF4050,Domain of unknown function
DUF4050,CUFF.28111.4
         (501 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP053975                                                     101   4e-21
gnl|LJGI|TC76388                                                       80   1e-14

>gnl|LJGI|BP053975 
          Length = 348

 Score =  101 bits (51), Expect = 4e-21
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                              
Query: 451 gaaatggttgagtttcttgttgacatttgggagctagaggggcttgtatga 501
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaatggttgagtttcttgttgacatttgggagctagaggggcttgtatga 191


>gnl|LJGI|TC76388 
          Length = 729

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 169/212 (79%)
 Strand = Plus / Plus

                                                                       
Query: 280 gaatttgtcaatcatggtcttcgtctctggaagcagacaaggaaacaatgggttggaaat 339
           ||||||||||| ||||| |||| || |||| | ||||  ||| |||||||||||||||||
Sbjct: 285 gaatttgtcaaccatgggcttcttcactggtaccagatgaggcaacaatgggttggaaat 344

                                                                       
Query: 340 aaaaagaccgagcgacggatgcaagttggagaatccagaataagttggaatgctacctac 399
           ||||   | ||| | | ||   ||||| ||||| | | |||||||| |||||| ||||||
Sbjct: 345 aaaacctctgagagtcagacagaagttcgagaaccaaaaataagtttgaatgccacctac 404

                                                                       
Query: 400 gagagtctactcggaaccaccaggccatttcgccagcccattcctcttggagaaatggtt 459
           || | |||||| |||| || || ||| |||| ||| ||||| ||| |  |||||||||| 
Sbjct: 405 gacaatctacttggaaacaacaagccctttccccaacccatccctttgagagaaatggta 464

                                           
Query: 460 gagtttcttgttgacatttgggagctagaggg 491
            | ||||||||||| |||||||||| ||||||
Sbjct: 465 tactttcttgttgatatttgggagcaagaggg 496