Miyakogusa Predicted Gene

Lj1g3v1858460.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1858460.1 tr|B9IQF5|B9IQF5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_738797 PE=4
SV=1,25.09,0.00000001,seg,NULL; no description,NULL; C2
DOMAIN-CONTAINING PROTEIN,NULL; SYNAPTOTAGMIN,NULL; C2 domain
(Cal,CUFF.28107.1
         (916 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV410237 UniRef100_A2Q4U9 Cluster: C2; n=1; Medicago tr...   127   1e-28
gnl|LJGI|FS340355 similar to UniRef100_A7Q7G9 Cluster: Chromosom...    66   4e-10
gnl|LJGI|FS332866 similar to UniRef100_A7PVT4 Cluster: Chromosom...    64   2e-09

>gnl|LJGI|AV410237 UniRef100_A2Q4U9 Cluster: C2; n=1; Medicago truncatula|Rep: C2 -
           Medicago truncatula (Barrel medic), partial (2%)
          Length = 419

 Score =  127 bits (64), Expect = 1e-28
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcagaagatgcagagaccgccgccggaagattttctgttgaaggagaccaagccccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atgcagaagatgcagagaccgccgccggaagattttctgttgaaggagaccaagccccac 415

               
Query: 61  cttg 64
           ||||
Sbjct: 416 cttg 419


>gnl|LJGI|FS340355 similar to UniRef100_A7Q7G9 Cluster: Chromosome chr18 scaffold_59,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_59, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (23%)
          Length = 841

 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 479 tgcttgctgtttggatggggacacaagctgatgaagcgtttcctgaggcgtggcactcgg 538
           ||||||| ||||||||||| ||||||||||||||  | ||||| ||||| |||||||| |
Sbjct: 1   tgcttgcagtttggatgggaacacaagctgatgagtcatttccagaggcctggcactctg 60

                
Query: 539 atgct 543
           |||||
Sbjct: 61  atgct 65


>gnl|LJGI|FS332866 similar to UniRef100_A7PVT4 Cluster: Chromosome chr8 scaffold_34,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_34, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (31%)
          Length = 778

 Score = 63.9 bits (32), Expect = 2e-09
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 478 atgcttgctgtttggatggggacacaagctgatgaagcgtttcctgaggcgtggca 533
           ||||| ||||||||| |||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 406 atgctggctgtttggttgggaacacaagctgatgaagcatttccagaggcttggca 461



 Score = 60.0 bits (30), Expect = 3e-08
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 236 ggcactttgagaagaagactaatcctgaatggagccaggttttcgctttctccaagga 293
           ||||||||||||||||||| || ||||||||||  |||||||| || ||||| |||||
Sbjct: 158 ggcactttgagaagaagaccaaccctgaatggaagcaggtttttgcattctcaaagga 215