Miyakogusa Predicted Gene
- Lj1g3v1819880.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1819880.1 Non Chatacterized Hit- tr|K3YG90|K3YG90_SETIT
Uncharacterized protein OS=Setaria italica GN=Si013258,32.53,9e-19,no
description,Armadillo-like helical; Arm,Armadillo;
Armadillo/beta-catenin-like repeats,Armadillo;,CUFF.28049.1
(1035 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59024 similar to UniRef100_A7P5X4 Cluster: Chromosome... 238 6e-62
gnl|LJGI|GO029494 similar to UniRef100_A7P5X4 Cluster: Chromosom... 121 9e-27
gnl|LJGI|TC78038 similar to UniRef100_A7P5X4 Cluster: Chromosome... 121 9e-27
>gnl|LJGI|TC59024 similar to UniRef100_A7P5X4 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (67%)
Length = 1829
Score = 238 bits (120), Expect = 6e-62
Identities = 213/244 (87%)
Strand = Plus / Plus
Query: 56 attctcagatcgcttctctctatgcgttgctcaatctcgggatcggaaacgatgcaaaca 115
||||||||| ||||| || ||||||||||||||||| || ||||||||||| |||||||
Sbjct: 598 attctcagaaagcttcgctgtatgcgttgctcaatctgggtatcggaaacgacgcaaaca 657
Query: 116 aagcagcgattgtcaaagttggcgctgtacacaagatgctgaagctcattgaatcgaggg 175
||||||| ||||| ||||||||| |||| ||||||||||| |||||||||||||| |
Sbjct: 658 aagcagcaattgtgaaagttggctctgttcacaagatgctcaagctcattgaatctccag 717
Query: 176 aaggtccagattcatcggtgtgtgaagccattgttgcgaattttcttggattgagtgctt 235
|||||| ||||||| ||||| |||||| || ||||||||||| ||||||||||||||||
Sbjct: 718 aaggtctagattcaggggtgtctgaagcaatcgttgcgaatttccttggattgagtgctt 777
Query: 236 tggattcgaataaaccgataattggatcctctggtgcaatacctttcctagttagaacac 295
|||||||||| |||||||||||||| || |||| |||| |||| || ||||||||||| |
Sbjct: 778 tggattcgaacaaaccgataattgggtcatctgctgcagtaccatttctagttagaaccc 837
Query: 296 ttca 299
||||
Sbjct: 838 ttca 841
Score = 121 bits (61), Expect = 9e-27
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 873 gatgagcgaggaaaagaaagcggtgaatcaattagtccagcagagtttgcagaacaacat 932
|||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1424 gatgagtgacgagaagaaagcggtgaagcaattagtccagcagagtttgcaaaacaacat 1483
Query: 933 gatgaaaattgtgaagagggctaacttgcgtcaagatttcgttccatcc 981
|| ||| |||||||||||||| ||||||| || ||| |||||||||||
Sbjct: 1484 gaggaagattgtgaagagggccaacttgccgcacgatatcgttccatcc 1532
Score = 81.8 bits (41), Expect = 8e-15
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 652 atgattgaggctgggatcgcgtcgtcgctgcttgagttgacgcttctgggtaccccactg 711
||||||||||| ||||| | ||||||| ||||||||||| ||||||| || ||| || ||
Sbjct: 1182 atgattgaggcggggattgtgtcgtcgttgcttgagttgtcgcttctcggaaccacattg 1241
Query: 712 gcacagaaaagggcttcaaggatattgggttgtttgaggatagacaaagggaa 764
|| ||||||||||| || ||||| ||||| | |||||| | |||||||||||
Sbjct: 1242 gctcagaaaagggcctcgaggatgttgggaagcttgagggtggacaaagggaa 1294
>gnl|LJGI|GO029494 similar to UniRef100_A7P5X4 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 861
Score = 121 bits (61), Expect = 9e-27
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 873 gatgagcgaggaaaagaaagcggtgaatcaattagtccagcagagtttgcagaacaacat 932
|||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 377 gatgagtgacgagaagaaagcggtgaagcaattagtccagcagagtttgcaaaacaacat 318
Query: 933 gatgaaaattgtgaagagggctaacttgcgtcaagatttcgttccatcc 981
|| ||| |||||||||||||| ||||||| || ||| |||||||||||
Sbjct: 317 gaggaagattgtgaagagggccaacttgccgcacgatatcgttccatcc 269
Score = 73.8 bits (37), Expect = 2e-12
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 636 tggtgacaggcaaaccatgattgaggctgggatcgcgtcgtcgctgcttgagttgacgct 695
|||||||||||| ||||||||||| ||||| | ||||||| ||||||||||| ||||
Sbjct: 635 tggtgacaggcagggtatgattgaggcggggattgtgtcgtcgttgcttgagttgtcgct 576
Query: 696 tctgggtaccccactggcacagaaaagggcttcaaggatattgggttgtttgaggataga 755
||| || ||| || |||| ||||||||||| | ||||| ||||| | |||||| | ||
Sbjct: 575 tctcggaaccacattggctcagaaaagggccccgaggatgttgggaagcttgagggtgga 516
Query: 756 caaagggaa 764
|||||||||
Sbjct: 515 caaagggaa 507
>gnl|LJGI|TC78038 similar to UniRef100_A7P5X4 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 564
Score = 121 bits (61), Expect = 9e-27
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 873 gatgagcgaggaaaagaaagcggtgaatcaattagtccagcagagtttgcagaacaacat 932
|||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 68 gatgagtgacgagaagaaagcggtgaagcaattagtccagcagagtttgcaaaacaacat 127
Query: 933 gatgaaaattgtgaagagggctaacttgcgtcaagatttcgttccatcc 981
|| ||| |||||||||||||| ||||||| || ||| |||||||||||
Sbjct: 128 gaggaagattgtgaagagggccaacttgccgcacgatatcgttccatcc 176