Miyakogusa Predicted Gene
- Lj1g3v1815510.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1815510.1 tr|Q49HL2|Q49HL2_9BACT SA1_PKSA OS=uncultured
bacterial symbiont of Discodermia dissoluta PE=4
SV=1,38.1,2.2,seg,NULL,CUFF.28038.1
(400 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW596418 UniRef100_O70491 Cluster: Stimulated by retino... 392 e-109
gnl|LJGI|BW598781 216 8e-56
gnl|LJGI|TC63368 similar to UniRef100_Q6BCY1 Cluster: Gag-Pol; n... 174 3e-43
gnl|LJGI|TC73983 homologue to UniRef100_A7Q023 Cluster: Chromoso... 135 2e-31
gnl|LJGI|TC78029 121 3e-27
gnl|LJGI|DC594502 107 5e-23
gnl|LJGI|BW597727 UniRef100_Q9TC94 Cluster: Uncharacterized tatC... 70 1e-11
gnl|LJGI|AV773034 62 3e-09
gnl|LJGI|FS346538 62 3e-09
gnl|LJGI|TC67339 homologue to UniRef100_A1STU5 Cluster: Regulato... 62 3e-09
gnl|LJGI|TC79155 similar to UniRef100_A9T5K8 Cluster: Predicted ... 56 2e-07
>gnl|LJGI|BW596418 UniRef100_O70491 Cluster: Stimulated by retinoic acid gene 6
protein; n=1; Mus musculus|Rep: Stimulated by retinoic,
partial (1%)
Length = 471
Score = 392 bits (198), Expect = e-109
Identities = 286/315 (90%), Gaps = 2/315 (0%)
Strand = Plus / Minus
Query: 87 cctctcttctaacttattgaaatatgataaaatgacaaaaggttccnnnnnnn-tgacaa 145
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 471 cctctcttctaacttattgaaatatgataaaatgacaaaaggttccaaaagaaatgacaa 412
Query: 146 aaagtcaatttataggcaatctgggcgcactggggcgctcaagcgctgccctggggcgct 205
||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct: 411 aaactcaatttataggcaatctgtgcgaactggggcgctcaagcgctgccctggggtgct 352
Query: 206 tgggcgcccatatggcagaagcaaagctccaagcttctggagtactggcgcttgagcgcc 265
||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||
Sbjct: 351 tgggcgcccatatggcagaagcacaac-ccaagcttctggagtgctggcgcttgagcgcc 293
Query: 266 aggtgagggcgcttgagcgccagcttcacgttgctggtggcttttcagcttttgtaactc 325
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 292 aggtgagggcgcttgagcgccagcttcacgatgctggtggcttttcagcttttgaaactc 233
Query: 326 ctcctttgaatgcttccttcaattcctttgcttcttggtcttccttttccatgagttatc 385
||||||||||||||| |||||||||| |||| ||| | |||||||||||| |||||| |
Sbjct: 232 ctcctttgaatgctttcttcaattcccttgcatctgtgccttccttttccaagagttaac 173
Query: 386 tgctgaagcactaaa 400
| ||| ||||||||
Sbjct: 172 tactgctgcactaaa 158
>gnl|LJGI|BW598781
Length = 294
Score = 216 bits (109), Expect = 8e-56
Identities = 124/129 (96%)
Strand = Plus / Minus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacataaggcctaggaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 151 atggctatggaatccatacaagaagatgaagataaaacctggaacataagtcctaggaaa 92
Query: 61 agttcctcaagctccagaactcaaaccctctcttctaacttattgaaatatgataaaatg 120
|||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct: 91 agttcctcaagctccagagctcaaaccctctattctaaattattgaaatatgataaaatg 32
Query: 121 acaaaaggt 129
|||||||||
Sbjct: 31 acaaaaggt 23
>gnl|LJGI|TC63368 similar to UniRef100_Q6BCY1 Cluster: Gag-Pol; n=1; Ipomoea
batatas|Rep: Gag-Pol - Ipomoea batatas (Sweet potato)
(Batate), partial (10%)
Length = 1773
Score = 174 bits (88), Expect = 3e-43
Identities = 121/132 (91%)
Strand = Plus / Minus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacataaggcctaggaga 60
||||||||| ||||||||||||||||| ||||| ||||||| |||||| ||| |||| |
Sbjct: 1684 atggctatgaaatccatacaagaagataaagatgaaacctgaaacatagggcttagggaa 1625
Query: 61 agttcctcaagctccagaactcaaaccctctcttctaacttattgaaatatgataaaatg 120
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1624 agctcctcaagctccagaactcaaaccctctcttctaacttatgaaaatatgataaaatg 1565
Query: 121 acaaaaggttcc 132
||||||||||||
Sbjct: 1564 acaaaaggttcc 1553
>gnl|LJGI|TC73983 homologue to UniRef100_A7Q023 Cluster: Chromosome chr8 scaffold_41,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_41, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 708
Score = 135 bits (68), Expect = 2e-31
Identities = 117/132 (88%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacataaggcctaggaga 60
||||||||| ||||||||||||||||| ||||| ||||||| |||||| ||| ||| |
Sbjct: 602 atggctatgaaatccatacaagaagataaagatgaaacctgaaacatagggcttagagaa 543
Query: 61 agttcctcaagctccagaactcaaaccctctcttctaacttattgaaatatgataaaatg 120
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 542 agctcctcaagctccataactcaaaccctctcttctaacttatgaaaatatgataaaatc 483
Query: 121 acaaaaggttcc 132
| ||||||||||
Sbjct: 482 a-aaaaggttcc 472
>gnl|LJGI|TC78029
Length = 503
Score = 121 bits (61), Expect = 3e-27
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacataaggcctaggaga 60
||||||||| |||||||||||||| | ||||| |||||| ||||||||||| ||| |
Sbjct: 416 atggctatgaaatccatacaagaaagtaaagatgaaacctcgaacataaggcttagagaa 357
Query: 61 agttcctcaagctccagaactcaaaccctctcttctaacttattgaaatatgataaaatg 120
|| |||||||||||| |||| ||||||||||||||||||||||| ||||||| ||| ||
Sbjct: 356 agctcctcaagctcccgaacccaaaccctctcttctaacttattacaatatgagaaattg 297
Query: 121 acaaaaggt 129
|||||||||
Sbjct: 296 acaaaaggt 288
>gnl|LJGI|DC594502
Length = 324
Score = 107 bits (54), Expect = 5e-23
Identities = 109/125 (87%), Gaps = 3/125 (2%)
Strand = Plus / Minus
Query: 277 cttgagcgccagcttcacgttgctggtggcttttcagctttt-gtaactcctcctttgaa 335
|||||||||||||| |||| | ||||||||||||||||||| ||||| || |||||||
Sbjct: 279 cttgagcgccagctgcacgctcttggtggcttttcagctttttgtaacccc--ctttgaa 222
Query: 336 tgcttccttcaattcctttgcttcttggtcttccttttccatgagttatctgctgaagca 395
||||| ||||||||||||||| ||||| ||| ||||||||| ||||| |||||| ||||
Sbjct: 221 tgctttcttcaattcctttgcatcttgaccttgcttttccataagttacctgctgcagca 162
Query: 396 ctaaa 400
|||||
Sbjct: 161 ctaaa 157
Score = 60.0 bits (30), Expect = 1e-08
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 210 cgcccatatggcagaagcaaagctccaagcttctggagtactggcgcttgagcgccag 267
||||||| |||||||||||| ||||| ||||||||||| ||||| ||||||||||||
Sbjct: 324 cgcccatgaggcagaagcaaaactcca-gcttctggagtgctggcacttgagcgccag 268
>gnl|LJGI|BW597727 UniRef100_Q9TC94 Cluster: Uncharacterized tatC-like protein ymf16;
n=1; Nephroselmis olivacea|Rep: Uncharacterized
tatC-like protein ymf16 - Nephroselmis olivacea, partial
(5%)
Length = 458
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 69 aagctccagaactcaaaccctctcttctaacttat 103
|||||||||||||||||||||||||||||||||||
Sbjct: 38 aagctccagaactcaaaccctctcttctaacttat 4
>gnl|LJGI|AV773034
Length = 411
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacat 47
|||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 64 atggctatggaatccatacaagaaaagaaggataaaacctggaacat 110
>gnl|LJGI|FS346538
Length = 688
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacat 47
|||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 65 atggctatggaatccatacaagaaaagaaggataaaacctggaacat 111
>gnl|LJGI|TC67339 homologue to UniRef100_A1STU5 Cluster: Regulatory inactivation of
DnaA Hda protein; n=1; Psychromonas ingrahamii 37|Rep:
Regulatory inactivation of DnaA Hda protein -
Psychromonas ingrahamii (strain 37), partial (6%)
Length = 926
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacat 47
|||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 851 atggctatggaatccatacaagaaaagaaggataaaacctggaacat 805
>gnl|LJGI|TC79155 similar to UniRef100_A9T5K8 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(4%)
Length = 1024
Score = 56.0 bits (28), Expect = 2e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1 atggctatggaatccatacaagaagatgaagataaaacctggaacata 48
||||| ||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 1004 atggccatgaaatccatacaagaagagaaaggtaaaacctggaacata 957