Miyakogusa Predicted Gene
- Lj1g3v1815490.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1815490.1 tr|G7J9U6|G7J9U6_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_3g105990 PE=3 SV=1,69.31,0,no
description,NULL; beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; seg,NULL;
RN,NODE_40924_length_1753_cov_101.549911.path1.1
(1779 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75885 similar to UniRef100_A7P644 Cluster: DNA-direct... 1221 0.0
gnl|LJGI|TC72662 weakly similar to UniRef100_Q1L6V6 Cluster: DNA... 1043 0.0
>gnl|LJGI|TC75885 similar to UniRef100_A7P644 Cluster: DNA-directed RNA polymerase;
n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase -
Vitis vinifera (Grape), partial (17%)
Length = 624
Score = 1221 bits (616), Expect = 0.0
Identities = 622/624 (99%)
Strand = Plus / Plus
Query: 1077 acatgtgaaaggtatccagtatcctccttcagagtctatggaggagtgcctgaacttgta 1136
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatgtgaaaggtatccagtatggtccttcagagtctatggaggagtgcctgaacttgta 60
Query: 1137 cctctttcctggcagcagcggtttgaataggaaggcacgcttccttgcgtatatggtgaa 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctctttcctggcagcagcggtttgaataggaaggcacgcttccttgcgtatatggtgaa 120
Query: 1197 gagtctgttgcttgcatatacgggccgcagaaaatgcgataacagggatgatttccgcaa 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagtctgttgcttgcatatacgggccgcagaaaatgcgataacagggatgatttccgcaa 180
Query: 1257 taagaggtttgagttggctgctgagctgcttgagcgtgagctgaaagtgcactttgcaca 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taagaggtttgagttggctgctgagctgcttgagcgtgagctgaaagtgcactttgcaca 240
Query: 1317 cgcccgaaagcgaatgtctaaggctttgcagagagatctgaatggagatcgtgatgtgcg 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgcccgaaagcgaatgtctaaggctttgcagagagatctgaatggagatcgtgatgtgcg 300
Query: 1377 cccaattgagcactatctcgatgcttcaattattaccaatggtctccaaagggccttttc 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cccaattgagcactatctcgatgcttcaattattaccaatggtctccaaagggccttttc 360
Query: 1437 cactggagcgtggactcatccttataaaaggttagaaaggacctctggtgttgttgcaaa 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactggagcgtggactcatccttataaaaggttagaaaggacctctggtgttgttgcaaa 420
Query: 1497 tcttgggcgaactaatccattacagaccatggctgaattaagaagaacaaggcaacaagt 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttgggcgaactaatccattacagaccatggctgaattaagaagaacaaggcaacaagt 480
Query: 1557 tcagtacactggaaaggttggggatgctagatacccgcatccttctcactggggcaaggt 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcagtacactggaaaggttggggatgctagatacccgcatccttctcactggggcaaggt 540
Query: 1617 ctgtttcctctctaccccggatggtgaaaattgtggactagtaaaaaatttgtctgtcac 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctgtttcctctctaccccggatggtgaaaattgtggactagtaaaaaatttgtctgtcac 600
Query: 1677 aggactagtgagtacaaacataag 1700
||||||||||||||||||||||||
Sbjct: 601 aggactagtgagtacaaacataag 624
>gnl|LJGI|TC72662 weakly similar to UniRef100_Q1L6V6 Cluster: DNA-directed RNA
polymerase; n=1; Solanum lycopersicum|Rep: DNA-directed
RNA polymerase - Solanum lycopersicum (Tomato)
(Lycopersicon esculentum), partial (12%)
Length = 712
Score = 1043 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Plus
Query: 108 agattcctcttccaacgccgagattctcaaggagctaggagaagacatggtcaagcattt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 agattcctcttccaacgccgagattctcaaggagctaggagaagacatggtcaagcattt 242
Query: 168 ctgcaccaaagcttccagaatgttcttcgacgagcacggcctcgtcagccaccagataaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgcaccaaagcttccagaatgttcttcgacgagcacggcctcgtcagccaccagataaa 302
Query: 228 ctcctacaaccagttcatcgccgccggtcttcaagccgcgttcgatgccttcggcgacct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcctacaaccagttcatcgccgccggtcttcaagccgcgttcgatgccttcggcgacct 362
Query: 288 caatgtcacgcccagctacgatccttccaagaagggtgacaacgagcatttcaaatacgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caatgtcacgcccagctacgatccttccaagaagggtgacaacgagcatttcaaatacgc 422
Query: 348 caccgtcaagttcgggaaggtaacgcttgatcggccgaagttctggggcggcgcggcgaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caccgtcaagttcgggaaggtaacgcttgatcggccgaagttctggggcggcgcggcgaa 482
Query: 408 tgctcaggagtttaagatgcttccgagacatgcacgccttcagaggatgacttatgctgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgctcaggagtttaagatgcttccgagacatgcacgccttcagaggatgacttatgctgc 542
Query: 468 taaaatgaaagtcactgttgaagttcaggtgtttacgccgcataaggttcggagtgataa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taaaatgaaagtcactgttgaagttcaggtgtttacgccgcataaggttcggagtgataa 602
Query: 528 gtttaagactgggaaagaagattacattgacagagagattataaaggaagataagagaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtttaagactgggaaagaagattacattgacagagagattataaaggaagataagagaga 662
Query: 588 gataattattgggagattgcctgttatggttatgtctgatctgtgctgga 637
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 663 gataattattgggagattgcctgttatggttatgtctgatctgtgttgga 712
Score = 69.9 bits (35), Expect = 5e-11
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 1 atgggtcacattggtagcagcaaggacggcattggcatcaacc 43
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 77 atgggtcacattggtagcagcaaggacggca-tggcatcaacc 118