Miyakogusa Predicted Gene
- Lj1g3v1788200.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1788200.2 tr|I1JK05|I1JK05_SOYBN Eukaryotic translation
initiation factor 3 subunit B OS=Glycine max PE=3 SV=1,83.93,0,TolB,
C-terminal domain,NULL; eIF2A,Translation initiation factor 2A, beta
propellor-like domain; SU,CUFF.27930.2
(675 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72934 similar to UniRef100_A7P685 Cluster: Chromosome... 396 e-110
gnl|LJGI|TC63423 similar to UniRef100_P56821 Cluster: Eukaryotic... 349 1e-95
gnl|LJGI|AV408392 226 1e-58
gnl|LJGI|TC61677 similar to UniRef100_A7P685 Cluster: Chromosome... 155 4e-37
gnl|LJGI|GO036905 UniRef100_A6ZEA0 Cluster: Eukaryotic translati... 70 2e-11
gnl|LJGI|TC81770 70 2e-11
gnl|LJGI|TC77340 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribo... 70 2e-11
gnl|LJGI|FS343626 similar to UniRef100_A6MZZ6 Cluster: H/ACA rib... 52 5e-06
gnl|LJGI|TC58860 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribo... 52 5e-06
>gnl|LJGI|TC72934 similar to UniRef100_A7P685 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (63%)
Length = 554
Score = 396 bits (200), Expect = e-110
Identities = 335/376 (89%), Gaps = 3/376 (0%)
Strand = Plus / Plus
Query: 299 tttatcggataatgaaggatcacttctttcagttctcgtggagagcaaggccgccatctt 358
||||||| ||| |||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 1 tttatcgtatattgaaggatcacttctttcagttcttgtggagaccgaggccgccatctt 60
Query: 359 tcttgactcctgagaaagaggaagagattgcaaataatttgaagaagtatagtaagaaat 418
|||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||
Sbjct: 61 tcttgactcctgagcaagaggaagagattgcaaagagcttaaagaagtatagtaagaaat 120
Query: 419 atgaggcagaagatcaagatgaatcgatgttgctgagtgagcaggagcaagagaagtgta 478
||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||
Sbjct: 121 atgaggcagaagatcaagatgtgtcattgttgctgagtgagcaggagcgcgagaagcgta 180
Query: 479 gaatgttgaaagaagagtgggacatgtgggttaatgaatggaagtggatgcatgaagaag 538
| |||||||||||||| ||||||| |||||||| |||||||||| |||||||||||||||
Sbjct: 181 ggatgttgaaagaagattgggacaagtgggttagtgaatggaagcggatgcatgaagaag 240
Query: 539 agaagttacagagggaacagcatagggatggagagacaagtgac-gaagaggaggaatac 597
||||||||||||||||| ||| ||| ||||||||| |||||||| |||||||||||||||
Sbjct: 241 agaagttacagagggaagagcttagagatggagaggcaagtgactgaagaggaggaatac 300
Query: 598 gaagcaaaag-acattgaag-tcgaggaagttatagatgtatctgaagagatccttcact 655
|| || || | || |||||| | |||||||| || ||||||| ||||||| |||||| ||
Sbjct: 301 gaggccaaggcaccttgaagcttgaggaagtcatcgatgtatgtgaagaggtccttccct 360
Query: 656 ttgagtatggtcaaga 671
||||||| ||| ||||
Sbjct: 361 ttgagtagggttaaga 376
>gnl|LJGI|TC63423 similar to UniRef100_P56821 Cluster: Eukaryotic translation
initiation factor 3 subunit B; n=1; Nicotiana
tabacum|Rep: Eukaryotic translation initiation factor 3
subunit B - Nicotiana tabacum (Common tobacco), partial
(19%)
Length = 732
Score = 349 bits (176), Expect = 1e-95
Identities = 263/292 (90%)
Strand = Plus / Plus
Query: 380 aagagattgcaaataatttgaagaagtatagtaagaaatatgaggcagaagatcaagatg 439
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aagagattgcaaagagcttaaagaagtatagtaagaaatatgaggcagaagatcaagatg 334
Query: 440 aatcgatgttgctgagtgagcaggagcaagagaagtgtagaatgttgaaagaagagtggg 499
|| ||||||||||||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct: 335 tgtcattgttgctgagtgagcaggagcgcgagaagcgtaggatgttgaaagaagattggg 394
Query: 500 acatgtgggttaatgaatggaagtggatgcatgaagaagagaagttacagagggaacagc 559
||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 395 acaagtgggttagtgaatggaagcggatgcatgaagaagagaagttacagagggaagagc 454
Query: 560 atagggatggagagacaagtgacgaagaggaggaatacgaagcaaaagacattgaagtcg 619
||| ||||||||| ||||||| ||||||||||||||||| || || |||||||||||||
Sbjct: 455 ttagagatggagaggcaagtgatgaagaggaggaatacgaggccaaggacattgaagtcg 514
Query: 620 aggaagttatagatgtatctgaagagatccttcactttgagtatggtcaaga 671
||||||| || ||||||||||||||| |||||||||||||||| ||| ||||
Sbjct: 515 aggaagtcatcgatgtatctgaagaggtccttcactttgagtagggttaaga 566
>gnl|LJGI|AV408392
Length = 425
Score = 226 bits (114), Expect = 1e-58
Identities = 168/186 (90%)
Strand = Plus / Plus
Query: 1 atgcggactgctcagaaagctggctgggtttcaaagctcactgctctgaaaggcaagcag 60
||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||
Sbjct: 240 atgcggactgctcagcaccctggtcgggtttcaaagctcactactctgaaaggcaagcag 299
Query: 61 gcaaatgctttgttttggtctcctgcaggtcgcttcattgtagtagcagggttgaaaggc 120
||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct: 300 gcaaatgctctgttttggtcacctgcaggtcgcttcattgtactagcaggtttgaaaggc 359
Query: 121 ttcaatggacagttggagttttacaatgttgatgagcttgaaacaatggttactgctgaa 180
|| |||||||||||||||||||||||||| ||||| |||||||| |||| ||||| ||
Sbjct: 360 ttaaatggacagttggagttttacaatgtcgatgaacttgaaaccatggcaactgcagat 419
Query: 181 catttt 186
||||||
Sbjct: 420 catttt 425
>gnl|LJGI|TC61677 similar to UniRef100_A7P685 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 707
Score = 155 bits (78), Expect = 4e-37
Identities = 102/110 (92%)
Strand = Plus / Plus
Query: 220 aggtatgttacaacttctgtgacttcagttcatgatgtggaaaatggtttcaacatatgg 279
|||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 456 aggtatgtaacaactgctgtgacttcagttcatgaaatggaaaatggtttcaacatatgg 515
Query: 280 tctttcagtggcaagcatctttatcggataatgaaggatcacttctttca 329
||||||| |||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 516 tctttcaatggcaagcatctttatcgtatattgcaggatcacttctttca 565
>gnl|LJGI|GO036905 UniRef100_A6ZEA0 Cluster: Eukaryotic translation initiation factor;
n=1; Artemisia annua|Rep: Eukaryotic translation
initiation factor - Artemisia annua (Sweet wormwood),
partial (6%)
Length = 698
Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 147 tgttgatgagcttgaaacaatggttactgctgaacattttatg 189
|||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 650 tgttgatgagcttgaaaccatggctactgctgaacattttatg 692
>gnl|LJGI|TC81770
Length = 850
Score = 69.9 bits (35), Expect = 2e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 222 gtatgttacaacttctgtgacttcagttcatgatgtggaaaatggtttcaa 272
||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 173 gtatgttgcaactgctgtgacttcagttcatgaaatggaaaatggtttcaa 223
>gnl|LJGI|TC77340 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribonucleoprotein
complex subunit 2; n=2; Oryza sativa|Rep: H/ACA
ribonucleoprotein complex subunit 2 - Oryza sativa
subsp. indica (Rice), partial (21%)
Length = 478
Score = 69.9 bits (35), Expect = 2e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 222 gtatgttacaacttctgtgacttcagttcatgatgtggaaaatggtttcaa 272
||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 124 gtatgttgcaactgctgtgacttcagttcatgaaatggaaaatggtttcaa 174
>gnl|LJGI|FS343626 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribonucleoprotein
complex subunit 2; n=2; Oryza sativa|Rep: H/ACA
ribonucleoprotein complex subunit 2 - Oryza sativa
subsp. indica (Rice), partial (29%)
Length = 687
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 239 tgacttcagttcatgatgtggaaaatggtttcaa 272
|||||||||||||||| ||||||||||||||||
Sbjct: 303 tgacttcagttcatgaaatggaaaatggtttcaa 336
>gnl|LJGI|TC58860 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribonucleoprotein
complex subunit 2; n=2; Oryza sativa|Rep: H/ACA
ribonucleoprotein complex subunit 2 - Oryza sativa
subsp. indica (Rice), partial (29%)
Length = 1269
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 239 tgacttcagttcatgatgtggaaaatggtttcaa 272
|||||||||||||||| ||||||||||||||||
Sbjct: 885 tgacttcagttcatgaaatggaaaatggtttcaa 918