Miyakogusa Predicted Gene

Lj1g3v1787940.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v1787940.1 Non Chatacterized Hit- tr|I1JU03|I1JU03_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,26.57,2e-18,PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; PPR,Pentatricopeptide repeat; PPR:
p,CUFF.27919.1
         (1563 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS326792 weakly similar to UniRef100_Q5CHL1 Cluster: Hy...   595   e-169

>gnl|LJGI|FS326792 weakly similar to UniRef100_Q5CHL1 Cluster: Hydroxyproline-rich
           glycoprotein dz-hrgp; n=1; Cryptosporidium hominis|Rep:
           Hydroxyproline-rich glycoprotein dz-hrgp -
           Cryptosporidium hominis, partial (3%)
          Length = 320

 Score =  595 bits (300), Expect = e-169
 Identities = 306/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccgtggcagtgcggaaagccaccgtgaaaccatcctccattgtaaccaccatcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13  atggccgtggcagtgcggaaagccaccgtgaaaccatcctccattgtaaccaccatcacc 72

                                                                       
Query: 61  tccctccttcaaacaccagattctgaacctctgaaaaaattctcatgctacctcactcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  tccctccttcaaacaccagattctgaacctctgaaaaaattctcatgctacctcactcca 132

                                                                       
Query: 121 agcttggttacccaagtgatcaagaacacacacaacccccaccatgctctcttcttcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agcttggttacccaagtgatcaagaacacacacaacccccaccatgctctcttcttcttc 192

                                                                       
Query: 181 aactgggcctccaaccctcaacccaaccccaacaactactcccaccctcgctcctgctac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 193 aactgggcctccaaccctcaacccaaccccaacaactactcccaccctcgctcctgttac 252

                                                                       
Query: 241 gccgccatcaccgacgtcttgctttcccactcccttttctccaccgccgactccctcctc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gctgccatcaccgacgtcttgctttcccactcccttttctccaccgccgactccctcctc 312

                   
Query: 301 cgccgctc 308
           ||||||||
Sbjct: 313 cgccgctc 320