Miyakogusa Predicted Gene
- Lj1g3v1782140.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1782140.1 Non Chatacterized Hit- tr|A3AFR6|A3AFR6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,59.55,6e-17,no
description,Homeodomain-like; coiled-coil,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; ,CUFF.27789.1
(870 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS350920 similar to UniRef100_A7R6H2 Cluster: Chromosom... 620 e-177
gnl|LJGI|FS324496 581 e-165
gnl|LJGI|TC69720 similar to UniRef100_A7R6H2 Cluster: Chromosome... 80 3e-14
gnl|LJGI|TC71361 homologue to UniRef100_Q39862 Cluster: Homeobox... 62 6e-09
gnl|LJGI|TC74320 homologue to UniRef100_A7R6H2 Cluster: Chromoso... 52 6e-06
gnl|LJGI|TC64231 homologue to UniRef100_A7R6H2 Cluster: Chromoso... 52 6e-06
>gnl|LJGI|FS350920 similar to UniRef100_A7R6H2 Cluster: Chromosome undetermined
scaffold_1278, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1278,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 681
Score = 620 bits (313), Expect = e-177
Identities = 313/313 (100%)
Strand = Plus / Minus
Query: 558 caggacaaaactgaaacaaacagaatccaactgtgagttattgaagaagtgctgtgaaac 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caggacaaaactgaaacaaacagaatccaactgtgagttattgaagaagtgctgtgaaac 444
Query: 618 tctaactgaggagaacaagaggctgcaaaaggagctgcaagagattaaatcaatgatgaa 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctaactgaggagaacaagaggctgcaaaaggagctgcaagagattaaatcaatgatgaa 384
Query: 678 aagtacaaagccagatcaaactttgtatatgcagcttccacttacaagcctcaccatttg 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagtacaaagccagatcaaactttgtatatgcagcttccacttacaagcctcaccatttg 324
Query: 738 ttcttcttgtaagcgaattcgcagtggcgagagcaataatggctctgcttcttcttctac 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcttcttgtaagcgaattcgcagtggcgagagcaataatggctctgcttcttcttctac 264
Query: 798 tactaccacagcctttactattagtccaaagaggtccatcatcacttctataggtgctag 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tactaccacagcctttactattagtccaaagaggtccatcatcacttctataggtgctag 204
Query: 858 ctactcatgatga 870
|||||||||||||
Sbjct: 203 ctactcatgatga 191
>gnl|LJGI|FS324496
Length = 400
Score = 581 bits (293), Expect = e-165
Identities = 296/297 (99%)
Strand = Plus / Plus
Query: 1 atggttggttttgataactctatcccaggccttcgacttggtcttggtcttggccattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 atggttggttttgataactctatcccaggccttcgacttggtcttggtcttggccattgc 163
Query: 61 atgatgaaaactgatcatgaacacaggaagaagaaaaaggaggatcaggatccatgtaac 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 164 atgatgaaaactgatcatgaacacaggaagaacaaaaaggaggatcaggatccatgtaac 223
Query: 121 aagttagcatacccatctcttaagttaggactccctgatcatgatgatgttgatctaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 aagttagcatacccatctcttaagttaggactccctgatcatgatgatgttgatctaact 283
Query: 181 acaaataacaatgatcaattaatactagctacaaagactgaatctgaggattggtttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 acaaataacaatgatcaattaatactagctacaaagactgaatctgaggattggtttcat 343
Query: 241 catccacatacctctaattctccaagcgcggtttcttcattaatctccaactcttgt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 catccacatacctctaattctccaagcgcggtttcttcattaatctccaactcttgt 400
>gnl|LJGI|TC69720 similar to UniRef100_A7R6H2 Cluster: Chromosome undetermined
scaffold_1278, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1278,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (55%)
Length = 1104
Score = 79.8 bits (40), Expect = 3e-14
Identities = 205/260 (78%)
Strand = Plus / Plus
Query: 401 ccaggaagaaactcaggctcaccaaacaacaatccctgctcttagaagatatcttcaagc 460
|||| ||||| ||||||||||||||| ||||||| ||| ||||||| | |||||| |
Sbjct: 407 ccagaaagaagctcaggctcaccaaagaacaatctgcactcctagaagagagcttcaaac 466
Query: 461 agcattctactctcaatctgaaacaaaagcaagagttagcaaggaagctgaatctgcgga 520
|||| |||||||||| ||||||||||||| ||||| || || ||||||| |||
Sbjct: 467 agcacagcactctcaatcctaaacaaaagcaagccttagctagacagttgaatctccggg 526
Query: 521 cgagacaagtggaggtgtggtttcagaacagaagagccaggacaaaactgaaacaaacag 580
| |||| || ||||||||||| || || | |||||||| ||||| |||| || || |
Sbjct: 527 ctcgacatgttgaggtgtggttccaaaatcggagagccagaacaaagctgaggcagacgg 586
Query: 581 aatccaactgtgagttattgaagaagtgctgtgaaactctaactgaggagaacaagaggc 640
| |||||||||| ||||||||||| |||||||| |||| || || |||| |||||
Sbjct: 587 aggtggactgtgagttcttgaagaagtgttgtgaaacgttaaccgacgaaaacaggaggc 646
Query: 641 tgcaaaaggagctgcaagag 660
|| | |||||||||||||||
Sbjct: 647 tgaagaaggagctgcaagag 666
>gnl|LJGI|TC71361 homologue to UniRef100_Q39862 Cluster: Homeobox-leucine zipper
protein; n=1; Glycine max|Rep: Homeobox-leucine zipper
protein - Glycine max (Soybean), partial (33%)
Length = 706
Score = 61.9 bits (31), Expect = 6e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 524 gacaagtggaggtgtggtttcagaacagaagagccaggacaaaactgaaacaaac 578
||||||| ||||||||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 86 gacaagttgaggtgtggttccagaacagaagagcaaggactaagctgaagcaaac 140
>gnl|LJGI|TC74320 homologue to UniRef100_A7R6H2 Cluster: Chromosome undetermined
scaffold_1278, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1278,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (57%)
Length = 1259
Score = 52.0 bits (26), Expect = 6e-06
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 469 actctcaatctgaaacaaaagcaagagttagcaaggaagctgaatctgcggacgagacaa 528
|||||||||| ||||| ||||||| |||||||| || | ||||| ||| | |||||
Sbjct: 620 actctcaatcctaaacagaagcaagctttagcaagacagttaaatctccggccccgacaa 679
Query: 529 gtggaggtgtggtttcagaacagaagagccaggacaaaactgaaacaaac 578
|| ||||||||||| ||||| | |||||||| ||||| ||||| |||||
Sbjct: 680 gttgaggtgtggttccagaatcgtagagccagaacaaagctgaagcaaac 729
>gnl|LJGI|TC64231 homologue to UniRef100_A7R6H2 Cluster: Chromosome undetermined
scaffold_1278, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1278,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (48%)
Length = 801
Score = 52.0 bits (26), Expect = 6e-06
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 469 actctcaatctgaaacaaaagcaagagttagcaaggaagctgaatctgcggacgagacaa 528
|||||||||| ||||| ||||||| |||||||| || | ||||| ||| | |||||
Sbjct: 424 actctcaatcctaaacagaagcaagctttagcaagacagttaaatctccggccccgacaa 483
Query: 529 gtggaggtgtggtttcagaacagaagagccaggacaaaactgaaacaaac 578
|| ||||||||||| ||||| | |||||||| ||||| ||||| |||||
Sbjct: 484 gttgaggtgtggttccagaatcgtagagccagaacaaagctgaagcaaac 533