Miyakogusa Predicted Gene
- Lj1g3v1720150.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1720150.1 tr|D3YBD2|D3YBD2_TRIRP Transcription initiation
factor OS=Trifolium repens PE=4 SV=1,71.73,0,seg,NULL;
TAF4,Transcription initiation factor TFIID component TAF4; RST,RST
domain of plant C-termi,CUFF.27715.1
(2766 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71160 similar to UniRef100_A7NU73 Cluster: Chromosome... 2753 0.0
gnl|LJGI|TC75391 similar to UniRef100_A7NU74 Cluster: Chromosome... 872 0.0
gnl|LJGI|BP083784 similar to UniRef100_A7NU73 Cluster: Chromosom... 276 7e-73
gnl|LJGI|TC74548 weakly similar to UniRef100_A7NU73 Cluster: Chr... 123 6e-27
gnl|LJGI|TC72837 similar to UniRef100_A7NU74 Cluster: Chromosome... 101 2e-20
>gnl|LJGI|TC71160 similar to UniRef100_A7NU73 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 1597
Score = 2753 bits (1389), Expect = 0.0
Identities = 1416/1425 (99%)
Strand = Plus / Plus
Query: 1342 gtgtctcctgcggtaaacaatacagcatcacaacaaaatttgaatccttggcaacaatca 1401
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtctcctgcggtaaacaatacaacatcacaacaaaatttgaatccttggcaacaatca 60
Query: 1402 aacgaacaaaattctggcatgttgtcatctgcttcatatgtcaaaagggaacctaatgac 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacgaacaaaattctggcatgttgtcatctgcttcatatgtcaaaagggaacctaatgac 120
Query: 1462 ctctctactgagcagcaatataggcaccatttgtctaaattgcacgggtttccttctgta 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctctctactgagcagcaatataggcaccatttgtctaaattgcacgggtttccttctgta 180
Query: 1522 aattctgctaaaactgaccagggtagtggtgccaatcaaggcactgtaaatgatgacttt 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattctgctaaaactgaccagggtagtggtgccaatcaaggcactgtaaatgatgacttt 240
Query: 1582 tcaagaggtcctccggcatccacaagcatgccacatacaacacctgctagcttgatgcca 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 tcaagaggtcctccggcatccacaagcatgccacatacaacacctgctagcttgacgcca 300
Query: 1642 ctcaattctgcttcctcttctgtagctcagccaggtccgactgtctctttaagctctcag 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcaattctgcttcctcttctgtagctcagccaggtccgactgtctctttaagctctcag 360
Query: 1702 atcccttcaaacacttctggtaagaaaccttctcatggtcagaaaaaaccagtcgaagca 1761
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 atcccttcaaacacttctggtaagaaaccttttcatggtcagaaaaaaccagtcgaagca 420
Query: 1762 gttggttcttcacctcctcctccaagcaagaagcaaaaagtgtctgggggatctttggac 1821
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 421 gttggttcttcacctcctcctccgagcaagaagcaaaaagtgtctggtggatctttggac 480
Query: 1822 caaagcattgaacagcttaatgatgttacagctgttggtggggttgatctgagggaggag 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caaagcattgaacagcttaatgatgttacagctgttggtggggttgatctgagggaggag 540
Query: 1882 gaagaacagttattttctgggcccagggaggatagtcgagtttcagaagcatctcgaaga 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaagaacagttattttctgggcccagggaggatagtcgagtttcagaagcatctcgaaga 600
Query: 1942 gttgtgcaagaagaagaggaaagtctgattttgcaaaaagctccgttgcagaaaaaattg 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttgtgcaagaagaagaggaaagtctgattttgcaaaaagctccgttgcagaaaaaattg 660
Query: 2002 actaagattatggctgagtgtggcttgaagggaatgagtaatgatgtggagaaatgcttg 2061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actaagattatggctgagtgtggcttgaagggaatgagtaatgatgtggagaaatgcttg 720
Query: 2062 tcactgtgtgtggaggaaagaatgcgtggattaataagtaacatgattagaatgtcaaaa 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcactgtgtgtggaggaaagaatgcgtggattaataagtaacatgattagaatgtcaaaa 780
Query: 2122 cagcgggttgaccttgaaaagatgagacaccggactgttgtcacttctgatgttcgccag 2181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cagcgggttgaccttgaaaagatgagacaccggactgttgtcacttctgatgttcgccag 840
Query: 2182 caaatcatggcaatgaatacaaaagcaagggaagagtgggagaaaaaacaggcagaaaca 2241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 caaatcatggcaatgaatacaaaagcaagggaagagtgggagaaaaaacaggcagaaaca 900
Query: 2242 gagaagctccggaaagtaactgatgttgaaggtcattccggagttgatggtgacagggag 2301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gagaagctccggaaagtaactgatgttgaaggtcattccggagttgatggtgacagggag 960
Query: 2302 aaggatgagggtcgcaacaaagcaataaaggtgaacaaggaggtggatgacaagatgagg 2361
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 961 aaggatgagggtcgcaacaaatcaataaaggtgaacaaggaggtggatgacaaaatgagg 1020
Query: 2362 acaaatgcggcaaatgttgctgcccgagctgctgttgggggagatgatgtgctgtcgaag 2421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 acaaatgcggcaaatgttgctgcccgagctgctgttgggggagatgatgtgctgtcgaag 1080
Query: 2422 tggcaacatatggctgagctagctaagcagaaacgtgaaggcggtatggattcttcatct 2481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tggcaacatatggctgagctagccaagcagaaacgtgaaggcggtatggattcttcatct 1140
Query: 2482 ggttctcagccagctaaagacttgagtcgcaagtcttcaccatcatcatcaggaaggagt 2541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ggttctcagccagctaaagacttgagtcgcaagtcttcaccatcatcatcaggaaggagt 1200
Query: 2542 acaaaagataatcaagaaagggggaaaaaaggcccaacttcaactcagacttcaggggct 2601
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1201 acaaaagataatcaagaaagggggaaaaaaggcccaacttcgactcagacttcaggggct 1260
Query: 2602 gctagaaaatttgggagacataatgccttagctcatcctaggatagctcgaagcatctct 2661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gctagaaaatttgggagacataatgccttagctcatcctaggatagctcgaagcatctct 1320
Query: 2662 gtgaaggatgcgattgcagtcctggagagggaacctcagatgtcgaaatcatcactctta 2721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gtgaaggatgcgattgcagtcctggagagggaacctcagatgtcgaaatcatcactctta 1380
Query: 2722 tatcgattgtatgagaaaatccattctgatgcttcaactgaatga 2766
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tatcgattgtatgagaaaatccattctgatgcttcaactgaatga 1425
>gnl|LJGI|TC75391 similar to UniRef100_A7NU74 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (79%)
Length = 580
Score = 872 bits (440), Expect = 0.0
Identities = 443/444 (99%)
Strand = Plus / Plus
Query: 1 atggacccatctatagtgaagcttcttgaagatgatgaggatgaaaccatgcattcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atggacccatctatagtgaagcttcttgaagatgatgaggatgaaaccatgcattcagga 196
Query: 61 gcagatgtcgaagcgtttcaagctgcattaaatagagacataggaggagacgcttcttct 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gcagatgtcgaagcatttcaagctgcattaaatagagacataggaggagacgcttcttct 256
Query: 121 tcacagctgtctgattcggatgcaggaagcaataactcattcagtcagtcattaccaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcacagctgtctgattcggatgcaggaagcaataactcattcagtcagtcattaccaaag 316
Query: 181 ctgccaacttctagccatgacaaccagactgactgtcaaaatcaagatcctaaaattgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgccaacttctagccatgacaaccagactgactgtcaaaatcaagatcctaaaattgca 376
Query: 241 aagcagcaagagcaaccttcatctgaaatggagatgaagcaacaaggacctctcatggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagcagcaagagcaaccttcatctgaaatggagatgaagcaacaaggacctctcatggaa 436
Query: 301 caacaacagaatgtaaataatcctcttttatctcgtaatcaatctcaagatgaatgtccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caacaacagaatgtaaataatcctcttttatctcgtaatcaatctcaagatgaatgtccc 496
Query: 361 caaggccagactggaccagtttcccatcaaaattctcaaattcagaactctgaaaaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caaggccagactggaccagtttcccatcaaaattctcaaattcagaactctgaaaaagat 556
Query: 421 actgtccgtaagcatgaggcagtc 444
||||||||||||||||||||||||
Sbjct: 557 actgtccgtaagcatgaggcagtc 580
>gnl|LJGI|BP083784 similar to UniRef100_A7NU73 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 357
Score = 276 bits (139), Expect = 7e-73
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 2628 cttagctcatcctaggatagctcgaagcatctctgtgaaggatgcgattgcagtcctgga 2687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cttagctcatcctaggatagctcgaagcatctctgtgaaggatgcgattgcagtcctgga 298
Query: 2688 gagggaacctcagatgtcgaaatcatcactcttatatcgattgtatgagaaaatccattc 2747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gagggaacctcagatgtcgaaatcatcactcttatatcgattgtatgagaaaatccattc 238
Query: 2748 tgatgcttcaactgaatga 2766
|||||||||||||||||||
Sbjct: 237 tgatgcttcaactgaatga 219
>gnl|LJGI|TC74548 weakly similar to UniRef100_A7NU73 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 573
Score = 123 bits (62), Expect = 6e-27
Identities = 110/126 (87%)
Strand = Plus / Plus
Query: 2639 ctaggatagctcgaagcatctctgtgaaggatgcgattgcagtcctggagagggaacctc 2698
||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
Sbjct: 194 ctagggtagctcgaagcatctctgtgaaggatgtaattgcagtcttagagagggaacccc 253
Query: 2699 agatgtcgaaatcatcactcttatatcgattgtatgagaaaatccattctgatgcttcaa 2758
||||||| |||||| ||||| || |||| |||||||| | ||| |||||||||||| ||
Sbjct: 254 agatgtctaaatcaccactcgtacatcgcttgtatgaaagaattcattctgatgctccag 313
Query: 2759 ctgaat 2764
||||||
Sbjct: 314 ctgaat 319
>gnl|LJGI|TC72837 similar to UniRef100_A7NU74 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (64%)
Length = 726
Score = 101 bits (51), Expect = 2e-20
Identities = 215/272 (79%), Gaps = 12/272 (4%)
Strand = Plus / Minus
Query: 1 atggacccatctatagtgaagcttcttgaagatgatgaggatgaaaccatgcattcagga 60
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct: 458 atggacccatctatagtgaaacttcttgaagatgacgaggatgaaacaatgcattcgcgg 399
Query: 61 gcagatgtcgaagcgtttcaagctgcattaaatagagacataggaggagacgcttcttct 120
| ||||| ||||| || || ||||| |||||||||| || |||||||| || ||| ||
Sbjct: 398 gtggatgtggaagctttccaggctgctctaaatagagatattggaggagatgcatctact 339
Query: 121 tcacagctgtctgattcggatgc------------aggaagcaataactcattcagtcag 168
|| ||||| |||| ||| ||| | || || |||||| || | ||||||
Sbjct: 338 tctcagctttctggttcagattcagttttgtctcaagaaaacaataatacagttagtcag 279
Query: 169 tcattaccaaagctgccaacttctagccatgacaaccagactgactgtcaaaatcaagat 228
|||||||| || |||||||||||||| ||||| ||| |||||| |||||||||||||
Sbjct: 278 tcattaccccagtggccaacttctagccttgacagccaaactgacagtcaaaatcaagag 219
Query: 229 cctaaaattgcaaagcagcaagagcaaccttc 260
|||||| || | |||| |||||||||||||
Sbjct: 218 cctaaatctgtagtgcaggaagagcaaccttc 187