Miyakogusa Predicted Gene
- Lj1g3v1648780.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1648780.2 tr|D7KAU1|D7KAU1_ARALL ATRBP47C OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_473892 PE=4
SV=1,26.49,0.0000000004,seg,NULL; no description,Nucleotide-binding,
alpha-beta plait; RRM_1,RNA recognition motif domain; R,CUFF.27617.2
(801 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP056008 similar to UniRef100_Q93YF1 Cluster: Nucleic a... 515 e-145
gnl|LJGI|TC70242 similar to UniRef100_Q93YF1 Cluster: Nucleic ac... 446 e-124
gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome... 416 e-116
gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome... 174 5e-43
gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome... 58 9e-08
>gnl|LJGI|BP056008 similar to UniRef100_Q93YF1 Cluster: Nucleic acid binding protein;
n=1; Nicotiana tabacum|Rep: Nucleic acid binding protein
- Nicotiana tabacum (Common tobacco), partial (18%)
Length = 533
Score = 515 bits (260), Expect = e-145
Identities = 271/275 (98%)
Strand = Plus / Minus
Query: 527 aatttgcaaacagaaataatgctgaagaggcgttgcagaagctaaatggcacaacgattg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aatttgcaaacagaaataatgctgaagaggcgttgcagaagctaaatggcacaacgattg 474
Query: 587 gcaagcaaacagttcgtctttcttggggccgcaatccggcaaataagccgtttagagggg 646
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 473 gcaagcaaacagttcgtctttcttgggcccgcaatccgccaaataagccgtttagagggg 414
Query: 647 atttcggcagtccttggaatggggcgtattatgggggacctgtttatgatggttatggat 706
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atttcgncagtccttggaatggggcgtattatgggggacctgtttatgatggttatggat 354
Query: 707 atgcttttccgccatcgcctcatgatcccagcacatttgctgctgcttatggggcttacc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atgcttttccgccatcgcctcatgatcccagcacatttgctgctgcttatggggcttacc 294
Query: 767 ctgtttatggagggcaccaacagcaagtaagctga 801
|||||||||||||||||| ||||||||||||||||
Sbjct: 293 ctgtttatggagggcacccacagcaagtaagctga 259
>gnl|LJGI|TC70242 similar to UniRef100_Q93YF1 Cluster: Nucleic acid binding protein;
n=1; Nicotiana tabacum|Rep: Nucleic acid binding protein
- Nicotiana tabacum (Common tobacco), partial (30%)
Length = 688
Score = 446 bits (225), Expect = e-124
Identities = 356/399 (89%), Gaps = 3/399 (0%)
Strand = Plus / Plus
Query: 403 acaactatatttgttggtggacttgaccctaatgttaatgctgaagatcttaggcagcca 462
||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||
Sbjct: 16 acaactatatttgttggaggactcgaccctaatgttacagaagaagatcttaggcagcca 75
Query: 463 ttctcacagtatggtgagatagtctctgttaagatacctgttggaaaaggatgtggtttt 522
||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 76 ttctcccagtacggtgagatagtctctgttaagatacctgtggggaaagggtgtggtttt 135
Query: 523 gtacaatttgcaaacagaaataatgctgaagaggcgttgcagaagctaaatggcacaacg 582
|| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 136 gtccagtttgcaaacagaaataatgctgaagaggcgttgcagaagctaaatgggacaaca 195
Query: 583 attggcaagcaaacagttcgtctttcttggggccgcaatccggcaaataagccgtttaga 642
||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct: 196 attggaaagcaaacagttcgtctttcttggggccgcaatccagcaaataagcagattaga 255
Query: 643 ggggatttcggcagtccttggaatggggcgtattatgggggacctgtttatgatggttat 702
||||||||||||||| ||| ||||| |||||||||| ||| ||||||||||| |||
Sbjct: 256 atggatttcggcagtccctggggaggggcatattatggggcaccagtttatgatggctat 315
Query: 703 ggatatgcttttccgccatcgcctcatgatcccagcacatttgctgctgcttatggggct 762
||||||||||| |||||| ||||||||||| || | || ||||||||||||||| ||
Sbjct: 316 ggatatgctttgccgcca---cctcatgatccaagaatatatgctgctgcttatggagcg 372
Query: 763 taccctgtttatggagggcaccaacagcaagtaagctga 801
||||| |||| ||||| |||||||||||||||||||||
Sbjct: 373 taccccatttacggaggccaccaacagcaagtaagctga 411
>gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 792
Score = 416 bits (210), Expect = e-116
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 1 atgttgatgcctaacacggagcaacctttccgcctgaactgggcaacatttagcacagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgttgatgcctaacacggagcaacctttccgcctgaactgggcaacatttagcacagga 642
Query: 61 gacaagcgttcagataatgttcctgatctctctatttttgtaggagatttagctggagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gacaagcgttcagataatgttcctgatctctctatttttgtaggagatttagctggagat 702
Query: 121 gttacagataccatgttgcatgaaacttttgctaataaatacccttctgttaaggctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gttacagataccatgttgcatgaaacttttgctaataaatacccttctgttaaggctgca 762
Query: 181 aaagttgtttttgatgccaatactggacgt 210
||||||||||||||||||||||||||||||
Sbjct: 763 aaagttgtttttgatgccaatactggacgt 792
>gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 761
Score = 174 bits (88), Expect = 5e-43
Identities = 178/208 (85%)
Strand = Plus / Plus
Query: 4 ttgatgcctaacacggagcaacctttccgcctgaactgggcaacatttagcacaggagac 63
|||||||| || || || ||||||||||| ||||||||||||||||||||||| || ||
Sbjct: 554 ttgatgcccaatacagaccaacctttccgtctgaactgggcaacatttagcactggggag 613
Query: 64 aagcgttcagataatgttcctgatctctctatttttgtaggagatttagctggagatgtt 123
||| ||||||||||||| ||||||| || ||||| ||||||||||||||| |||||||
Sbjct: 614 aagacttcagataatgtttctgatctttcaattttcataggagatttagctgcagatgtt 673
Query: 124 acagataccatgttgcatgaaacttttgctaataaatacccttctgttaaggctgcaaaa 183
|| |||| |||| |||||||| ||||||| | ||||||||| || || || ||||||
Sbjct: 674 acggatagtttgttacatgaaacatttgctagtgtatacccttcagtcaaagccgcaaaa 733
Query: 184 gttgtttttgatgccaatactggacgtt 211
||||||||||||||||||||||| ||||
Sbjct: 734 gttgtttttgatgccaatactggccgtt 761
>gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 769
Score = 58.0 bits (29), Expect = 9e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 582 gattggcaagcaaacagttcgtctttcttggggccgcaatccggcaaataagc 634
|||||| ||||| ||||| ||||||||||||||||||| ||| | ||||||||
Sbjct: 270 gattgggaagcagacagtgcgtctttcttggggccgcagtccaggaaataagc 322