Miyakogusa Predicted Gene
- Lj1g3v1648780.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v1648780.1 Non Chatacterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,28.42,0.000000000002,seg,NULL; no description,Nucleotide-binding,
alpha-beta plait; RRM_1,RNA recognition motif domain; R,CUFF.27617.1
(888 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome... 1318 0.0
gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome... 337 7e-92
gnl|LJGI|BW602948 similar to UniRef100_A7NTR1 Cluster: Chromosom... 323 1e-87
gnl|LJGI|TC77516 similar to UniRef100_Q0JCT9 Cluster: Os04g04499... 96 4e-19
gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Clust... 54 2e-06
gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Clust... 52 6e-06
>gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 792
Score = 1318 bits (665), Expect = 0.0
Identities = 668/669 (99%)
Strand = Plus / Plus
Query: 1 atgcaatcatccaacggttctgattcccaacaaacggagcagcagcggcaaccgcctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 atgcaatcatccaacggttctgattcccaacaaacggagcagcagcggcaaccgcctcag 183
Query: 61 ccagtggcactggcgccgccaccgcagcagcagcagtgggtgccgatgcaataccctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ccagtggcactggcgccgccaccgcagcagcagcagtgggtgccgatgcaataccctgcc 243
Query: 121 gccgcgatggtaatgccgcaccacatgttgccgccactgcattacgcgccgccgccgcag 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 gccgcgatggtaatgccgcaccacatgttgccgccacagcattacgcgccgccgccgcag 303
Query: 181 gcctacatgccttaccatcaataccagcagcaggtgccgatgcacgtgccgtctcactcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gcctacatgccttaccatcaataccagcagcaggtgccgatgcacgtgccgtctcactcg 363
Query: 241 caccagggatccagcgccgccgataacaagacgatctgggtcggtgatttgcatcactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caccagggatccagcgccgccgataacaagacgatctgggtcggtgatttgcatcactgg 423
Query: 301 atggatgagaattatctccaccgctgttttgcttccatcggcgagattaactctattaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atggatgagaattatctccaccgctgttttgcttccatcggcgagattaactctattaag 483
Query: 361 gttattcgcaataagtctactggtctgtcagagggttatggatttgtggaattctattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttattcgcaataagtctactggtctgtcagagggttatggatttgtggaattctattca 543
Query: 421 catagcacagctgagaaagtcttacaaacttatgctgggatgttgatgcctaacacggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 catagcacagctgagaaagtcttacaaacttatgctgggatgttgatgcctaacacggag 603
Query: 481 caacctttccgcctgaactgggcaacatttagcacaggagacaagcgttcagataatgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 caacctttccgcctgaactgggcaacatttagcacaggagacaagcgttcagataatgtt 663
Query: 541 cctgatctctctatttttgtaggagatttagctggagatgttacagataccatgttgcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctgatctctctatttttgtaggagatttagctggagatgttacagataccatgttgcat 723
Query: 601 gaaacttttgctaataaatacccttctgttaaggctgcaaaagttgtttttgatgccaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaaacttttgctaataaatacccttctgttaaggctgcaaaagttgtttttgatgccaat 783
Query: 661 actggacgt 669
|||||||||
Sbjct: 784 actggacgt 792
>gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 761
Score = 337 bits (170), Expect = 7e-92
Identities = 338/394 (85%)
Strand = Plus / Plus
Query: 277 tgggtcggtgatttgcatcactggatggatgagaattatctccaccgctgttttgcttcc 336
||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 368 tgggttggagatttgcatcactggatggacgaaaattatctccaccgctgtttcgcttcc 427
Query: 337 atcggcgagattaactctattaaggttattcgcaataagtctactggtctgtcagagggt 396
| |||||||||| ||| || || ||||||||||||||| |||||| | |||||||||
Sbjct: 428 accggcgagatttcctccatcaaagttattcgcaataagcagactggtttatcagagggt 487
Query: 397 tatggatttgtggaattctattcacatagcacagctgagaaagtcttacaaacttatgct 456
|||||||||||||| ||||||||||| ||||||||||||||| ||||| | |||||||
Sbjct: 488 tatggatttgtggagttctattcacacgccacagctgagaaagttttacagaattatgct 547
Query: 457 gggatgttgatgcctaacacggagcaacctttccgcctgaactgggcaacatttagcaca 516
|| | |||||||| || || || ||||||||||| |||||||||||||||||||||||
Sbjct: 548 ggagtcttgatgcccaatacagaccaacctttccgtctgaactgggcaacatttagcact 607
Query: 517 ggagacaagcgttcagataatgttcctgatctctctatttttgtaggagatttagctgga 576
|| || ||| ||||||||||||| ||||||| || ||||| ||||||||||||||| |
Sbjct: 608 ggggagaagacttcagataatgtttctgatctttcaattttcataggagatttagctgca 667
Query: 577 gatgttacagataccatgttgcatgaaacttttgctaataaatacccttctgttaaggct 636
|||||||| |||| |||| |||||||| ||||||| | ||||||||| || || ||
Sbjct: 668 gatgttacggatagtttgttacatgaaacatttgctagtgtatacccttcagtcaaagcc 727
Query: 637 gcaaaagttgtttttgatgccaatactggacgtt 670
||||||||||||||||||||||||||||| ||||
Sbjct: 728 gcaaaagttgtttttgatgccaatactggccgtt 761
>gnl|LJGI|BW602948 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 474
Score = 323 bits (163), Expect = 1e-87
Identities = 166/167 (99%)
Strand = Plus / Plus
Query: 1 atgcaatcatccaacggttctgattcccaacaaacggagcagcagcggcaaccgcctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgcaatcatccaacggttctgattcccaacaaacggagcagcagcggcaaccgcctcag 367
Query: 61 ccagtggcactggcgccgccaccgcagcagcagcagtgggtgccgatgcaataccctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccagtggcactggcgccgccaccgcagcagcagcagtgggtgccgatgcaataccctgcc 427
Query: 121 gccgcgatggtaatgccgcaccacatgttgccgccactgcattacgc 167
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 428 gccgcgatggtaatgccgcaccacatgttgccgccacagcattacgc 474
>gnl|LJGI|TC77516 similar to UniRef100_Q0JCT9 Cluster: Os04g0449900 protein; n=1;
Oryza sativa Japonica Group|Rep: Os04g0449900 protein -
Oryza sativa subsp. japonica (Rice), partial (10%)
Length = 482
Score = 95.6 bits (48), Expect = 4e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 277 tgggtcggtgatttgcatcactggatggatgagaattatctccaccgctgttttgcttcc 336
||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 400 tgggttggagatttgcatcactggatggacgaaaattatctccaccgctgtttcgcttcc 459
Query: 337 atcggcgagatt 348
| ||||||||||
Sbjct: 460 accggcgagatt 471
>gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (41%)
Length = 832
Score = 54.0 bits (27), Expect = 2e-06
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 358 aaggttattcgcaataagtctactggtctgtcagagggttatggatttgtggaattctat 417
||||| ||||| |||||| ||||||| ||| ||||| |||||||||||||| ||||||
Sbjct: 549 aaggtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctat 608
Query: 418 tcacatagc-acagctgagaaagtctt 443
|| | ||| |||||||||||||||||
Sbjct: 609 tcgc-gagcaacagctgagaaagtctt 634
>gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (26%)
Length = 783
Score = 52.0 bits (26), Expect = 6e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 358 aaggttattcgcaataagtctactggtctgtcagagggttatggatttgtggaattctat 417
||||| ||||| |||||| ||||||| ||| ||||| |||||||||||||| ||||||
Sbjct: 603 aaggtcattcggaataagcaaactggtcagtcggagggatatggatttgtggagttctat 662
Query: 418 tc 419
||
Sbjct: 663 tc 664